CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +LE+ +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   83 LFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +LE+ +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   83 LFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQ 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L P  E  G          I   +GSL+A  ++ + + AA  GSGW WL ++     LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLTPNSEEKGTVVDK-----IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 375
            +FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K L V +TANQD PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW + ++ ++++
Sbjct:   85 LFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGK-LAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQK 207          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 3.563e-21
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +LE+ +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   83 LFWELLSPEKQD----ITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.563e-21
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 IFWKNLAP--VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FWKNLAP    E   +     L  AI+  +GS+E   +   A    L GSGW WL  +    +LE+ +T +QDP+  K    VP+ G+D+WEHAYYLQY N K  Y++ IW V+NW+ A D ++
Sbjct:   79 LFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLVANGPGGKLEIVSTKDQDPVTDK----VPVFGVDMWEHAYYLQYFNNKASYVEGIWKVLNWRTAEDRFK 199          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L P  E  G          I   +GSL+    + + + A   GSGW WL +D + K LE+ +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:   83 LFWQLLTPNSEEKGTVIDK-----IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM_STRP82.728e-2139.84Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP12.728e-2139.84Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STAS12.728e-2141.80Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_HAEIN2.728e-2142.64Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_STRP63.563e-2139.84Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ASPOR3.563e-2141.60Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_STACA4.653e-2140.65Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM1_STAAW4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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