CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.653e-21
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 IFWKNLAPVH--EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDT--EFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FWKNLAP    E        SL   I+  +GS +   +  SA    + GSGW WL  ++  E  RL + TT +QDP+V      VP+ G+D+WEHAYYLQY N K  Y++NIW V+NWK A + +Q
Sbjct:  108 LFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKESTAEKGRLRIITTKDQDPVVGGE---VPVFGVDMWEHAYYLQYLNGKAAYVENIWKVINWKTAEERFQ 231          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 7.938e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +LE+ +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S +YQ
Sbjct:   83 LFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSALYQ 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.938e-21
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    4 FWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            FW++LA  ++ G   P  +L   I   FGSL+A  QK +   +   GSGW WL + T   +L V +T NQD PL+  + T   PLLG+DVWEHAYYL+Y+N + DY+K  W+V+NW   ++ Y +
Sbjct:  103 FWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNE 224          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.037e-20
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L P  E  G          I   +GSL+   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   83 LFWELLTPNSEEKGTVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM1_STAAN4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB4.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA84.653e-2141.80Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA34.653e-2141.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM_NEUCR6.078e-2143.31Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM_STRPY7.938e-2139.84Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ACIAD7.938e-2143.20Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM_STAHJ1.037e-2040.98Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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