CX294078

Overview
NameCX294078
Unique NameCX294078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_GNEPA (Photosystem II reaction center protein I OS=Gnetum parvifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVIFFVSLFLFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_PSEMZ (Photosystem II reaction center protein I OS=Pseudotsuga menziesii GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_PSEJA (Photosystem II reaction center protein I OS=Pseudotsuga japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_PINTH (Photosystem II reaction center protein I OS=Pinus thunbergii GN=psbI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_PINKO (Photosystem II reaction center protein I OS=Pinus koraiensis GN=psbI PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_ZYGCR (Photosystem II reaction center protein I OS=Zygnema circumcarinatum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTV+IFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVIIFFVSLFVFGFLSNDPSRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_PSINU (Photosystem II reaction center protein I OS=Psilotum nudum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVI F+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVILFISLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_CUSRE (Photosystem II reaction center protein I OS=Cuscuta reflexa GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_CUSEX (Photosystem II reaction center protein I OS=Cuscuta exaltata GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CX294078 vs. ExPASy Swiss-Prot
Match: PSBI_CHAGL (Photosystem II reaction center protein I OS=Chaetosphaeridium globosum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNPGR+E
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPGRKE 36          
The following BLAST results are available for this feature:
BLAST of CX294078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_GNEPA1.296e-1291.67Photosystem II reaction center protein I OS=Gnetum... [more]
PSBI_PSEMZ1.692e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PSEJA1.692e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PINTH2.210e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_PINKO2.210e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_ZYGCR2.886e-1288.89Photosystem II reaction center protein I OS=Zygnem... [more]
PSBI_PSINU2.886e-1288.89Photosystem II reaction center protein I OS=Psilot... [more]
PSBI_CUSRE2.886e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CUSEX2.886e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CHAGL2.886e-1291.67Photosystem II reaction center protein I OS=Chaeto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005G02SK FlavRip1 Citrus clementina cDNA clone C05005G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294078 ID=CX294078; Name=CX294078; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA
back to top