CX294088

Overview
NameCX294088
Unique NameCX294088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_NANDO (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica GN=atpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35
Identity = 77/100 (77.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+QAAPLTV EQI+TIYTGTNGYLDSLEIGQV+KFLVELRTYLKTNKPQFQEIISSTK  T                RF+LQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPLTVGEQILTIYTGTNGYLDSLEIGQVKKFLVELRTYLKTNKPQFQEIISSTKTLTEEAEVLLKEAIQEQTERFILQEQ 506
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_POPTR (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 78/101 (77.23%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+QAAP TV EQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKT+K QFQEIISSTK FT                RFLLQEQ+
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPFTVAEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQV 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_POPAL (ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 78/101 (77.23%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+QAAP TV EQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKT+K QFQEIISSTK FT                RFLLQEQ+
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPFTVAEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQV 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_LOBMA (ATP synthase subunit alpha, chloroplastic OS=Lobularia maritima GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 77/101 (76.24%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVR FLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+L
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRTFLVQLRTYLKTNKPQFQEIISSTKTLTPEAESFLKEGIQEQLERFLLQEKL 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_CAPBU (ATP synthase subunit alpha, chloroplastic OS=Capsella bursa-pastoris GN=atpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE++
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEKV 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_ARATH (ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=atpA PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE++
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEKV 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_OLIPU (ATP synthase subunit alpha, chloroplastic OS=Olimarabidopsis pumila GN=atpA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE+
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEK 506
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_DRANE (ATP synthase subunit alpha, chloroplastic OS=Draba nemorosa GN=atpA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 77/101 (76.24%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLL E+L
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTAEAESFLKEGIQEQLERFLLLEKL 507
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_SPIOL (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea GN=atpA PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 75/100 (75.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ Q+APLTVEEQ+MTIYTGTNGYLDSLE+ QVRK+LVELRTY+KTNKP+FQEIISSTK FT                RFLLQEQ
Sbjct:  407 TQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_COFAR (ATP synthase subunit alpha, chloroplastic OS=Coffea arabica GN=atpA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.646e-35
Identity = 77/100 (77.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+QAAPL VEEQIMTIYTGT GYLDSLEIGQVRKFLV LR Y+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPLAVEEQIMTIYTGTTGYLDSLEIGQVRKFLVALRAYVKTNKPQFQEIISSTKTFTEEAESLLKEAIQEQMDRFLLQEQ 506
The following BLAST results are available for this feature:
BLAST of CX294088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
ATPA_NANDO3.315e-3577.00ATP synthase subunit alpha, chloroplastic OS=Nandi... [more]
ATPA_POPTR4.330e-3577.23ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_POPAL4.330e-3577.23ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_LOBMA4.330e-3576.24ATP synthase subunit alpha, chloroplastic OS=Lobul... [more]
ATPA_CAPBU4.330e-3575.25ATP synthase subunit alpha, chloroplastic OS=Capse... [more]
ATPA_ARATH4.330e-3575.25ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_OLIPU5.655e-3576.00ATP synthase subunit alpha, chloroplastic OS=Olima... [more]
ATPA_DRANE5.655e-3576.24ATP synthase subunit alpha, chloroplastic OS=Draba... [more]
ATPA_SPIOL7.386e-3575.00ATP synthase subunit alpha, chloroplastic OS=Spina... [more]
ATPA_COFAR9.646e-3577.00ATP synthase subunit alpha, chloroplastic OS=Coffe... [more]

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Properties
Property NameValue
Genbank descriptionC05005H10SK FlavRip1 Citrus clementina cDNA clone C05005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294088 ID=CX294088; Name=CX294088; organism=Citrus clementina; type=EST; length=367bp
ACTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACA
GGCCCAAGCAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATA
CAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
TTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCA
AGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTT
TGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAA
TTATAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAATAT
AAAAAAAAAAAAAAAAA
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