CX294108

Overview
NameCX294108
Unique NameCX294108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            CGSG  C  +  G G     GG+LG  IS  MF+ +L HRN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNP-GDYCPPSSQWPCAPGRKYFGRGP 193          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.044e-34
Identity = 71/137 (51.82%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            C SG        G G  GG++G +IS  MF+ +L HRND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSGQWPCAPGRKYFGRGP 193          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.670e-34
Identity = 73/137 (53.28%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            CG G  C  +  G     G+LG +IS  MF+ +L HRND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSSQWPCAPGRKYFGRGP 183          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.554e-34
Identity = 69/122 (56.56%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCP-LPGQ-YYGRGP 539
            G   G++  IIS  MF+ +L HRND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT  ETTGGW  AP G YAWGYCY+R+   P S YC +    P  PGQ YYGRGP
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGP 199          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.767e-34
Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  126 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            +++ CG G  C  + +G  + GG L  +IS + F ++L HRND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT  ETTGGWP AP G YAWGYC++R+  +  S YC      PC    QYYGRGP
Sbjct:   47 TSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE--QNPSTYCQASSEFPCASGKQYYGRGP 181          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.767e-34
Identity = 73/132 (55.30%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  156 CGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGP 539
            C  + +G G D G L  +I+RE F+ +L HRND  CPARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT  ETTG  GW  AP G Y WGYCY R+++   +DYC      PC    QY+GRGP
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN--PADYCQWDPNYPCAPGKQYFGRGP 186          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.325e-33
Identity = 69/135 (51.11%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  141 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            G G   G    G G  GG +  ++S+E+FE LL HRND  CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT  ETTGGW  AP G Y+WGYC+  ++   AS YC      PC    +Y+GRGP
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGP 200          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  123 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVS-RPASDYCYR--YCPCPLPGQYYGRGP 539
            G    C      G      G  G  +  I+SR +F+ +L HRND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT  ETTGGW  AP G Y+WGYC+  + +    SDYC +    PC    +YYGRGP
Sbjct:   54 GCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGP 195          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.035e-33
Identity = 71/137 (51.82%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            CG G  C  +  G     G+LG +IS  MF+ +L HRND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSP-GDYCTPSSQWPCAPGRKYFGRGP 183          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            G   G+LG +IS  MF+ +L HRND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSP-GDYCTPSNQWPCAPGRKYFGRGP 181          
The following BLAST results are available for this feature:
BLAST of CX294108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHIT_SOLTU1.565e-3452.52Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI4_SOLTU2.044e-3451.82Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU2.670e-3453.28Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC4.554e-3456.56Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_PEA7.767e-3450.71Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_THECC7.767e-3455.30Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI9_ORYSJ1.325e-3351.11Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ3.855e-3347.18Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU5.035e-3351.82Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU6.575e-3355.28Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05011B10SK AbsAOv1 Citrus clementina cDNA clone C05011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294108 ID=CX294108; Name=CX294108; organism=Citrus clementina; type=EST; length=560bp
AATTCGGCCATTTCGGCCGGGGACACCAAGTAAAGGATAATTGATATCAT
AACTCTTGCTTTAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCG
TTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGCATAGAAA
TGATGTACGATGCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAG
AGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGT
CCATGTCCTTTGCCAGGGCAATACTATGGCCGAGGTCCATTCACTCACTT
GGATTGCATT
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