CX294108

Overview
NameCX294108
Unique NameCX294108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 70/137 (51.09%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            CG G  C  +  G     G+LG +IS  MF+ +L HRND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGP
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSSQWPCAPGRKYFGRGP 187          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 73/127 (57.48%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  171 TGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGP 539
            +G     G L  +ISRE F  +L HRND  CPARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTG  GW  AP G YAWGYCY R+++ P S YC      PC    QY+GRGP
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELN-PPSSYCASDPNYPCAPGKQYFGRGP 167          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 73/127 (57.48%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  171 TGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGP 539
            +G     G L  +ISRE F  +L HRND  CPARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTG  GW  AP G YAWGYCY R+++ P S YC      PC    QY+GRGP
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELN-PPSSYCASDPNYPCAPGKQYFGRGP 189          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.499e-32
Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            GT  G +  I+SR  F+ +L HRND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q    +SDYC      PC    +YYGRGP
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGASSDYCTPSAQWPCAPGKRYYGRGP 139          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.270e-32
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            GT  G +  IIS   F+ +L HRND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT  ETTGGW  AP G +AWGYC+ +Q    A+DYC      PC    +YYGRGP
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGAAADYCTPSAQWPCAPGKRYYGRGP 139          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 136.732 bits (343), Expect = 7.270e-32
Identity = 72/151 (47.68%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  123 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L HRND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     YYGRGP
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGP 191          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  183 TDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            T GG++G+++   +F+ +L +RND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT  ETTGGWP AP G YAWGYC++ + +        +  PC    +YYGRGP
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGP 193          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  189 GGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            GG +  I+SR +F+ +L HRND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     YYGRGP
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGP 194          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.240e-31
Identity = 68/142 (47.89%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  123 GSAQNCGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            G    C  G  CG   T   + GG  +  IIS  +F+ +L HRND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT  ETTGGWP AP G Y+WGYC+  + +  A  YC      PC    +YYGRGP
Sbjct:   52 GCQSQCSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGP 191          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.115e-31
Identity = 69/142 (48.59%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  126 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPAS-DYCYRYC--PCPLPGQYYGRGP 539
            SA  CG G          G+ G  +  I+SR +F+ +L HRND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT  ETTGGW  AP G YAWGYC+  +    A  DYC +    PC    +YYGRGP
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGP 198          
The following BLAST results are available for this feature:
BLAST of CX294108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHIC_SOLLC1.122e-3251.09Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_GOSHI1.122e-3257.48Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.122e-3257.48Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_HORVU2.499e-3254.1026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE7.270e-3254.10Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_HORVU7.270e-3247.6826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIX_PEA9.495e-3248.74Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE9.495e-3254.62Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI3_ORYSJ1.240e-3147.89Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ2.115e-3148.59Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC05011B10SK AbsAOv1 Citrus clementina cDNA clone C05011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294108 ID=CX294108; Name=CX294108; organism=Citrus clementina; type=EST; length=560bp
AATTCGGCCATTTCGGCCGGGGACACCAAGTAAAGGATAATTGATATCAT
AACTCTTGCTTTAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCG
TTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGCATAGAAA
TGATGTACGATGCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAG
AGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGT
CCATGTCCTTTGCCAGGGCAATACTATGGCCGAGGTCCATTCACTCACTT
GGATTGCATT
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