CX294108

Overview
NameCX294108
Unique NameCX294108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.791e-30
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 3
Query:  198 LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            +  +IS+ +FE +L HRND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT  ETTGGW  AP G Y+WGYCY R+   P  DYC   +  PC    +Y+GRGP
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSP-GDYCASSQQWPCAPGKKYFGRGP 119          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  141 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYI 455
            G G   G    G G   G L  II   MF+D+L +RND +CPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ET G WP A G +Y WGYC++
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM 170          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.128e-27
Identity = 57/125 (45.60%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  174 GHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGP 539
            G+      +  I+S +++  L  H++D  CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ   ETTGGW  AP G YAWG CY  +++ P S YC    +  PC     Y+GRGP
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEIN-PQSSYCDATDKQWPCYPGKSYHGRGP 164          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.041e-27
Identity = 58/114 (50.88%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  198 LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            +G II+R MFE +L HR D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT  ETTGGW  AP G +AWGYC + +++             P    YYGRGP
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEIT-------------PSDPPYYGRGP 126          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQ 521
            G+   ++G I++ ++F ++L +RND RCPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   A  G +A GYC++R+ ++  S + Y   P  L GQ
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSGF-YGRGPIQLTGQ 124          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.328e-25
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            GT     G I++RE+FE +L  RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC++RQ+ +  SD            +YYGRGP
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQ--SD------------RYYGRGP 122          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.265e-25
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            GT     G I++RE+FE +L  RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC+++Q+ +  SD            +YYGRGP
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQ--SD------------RYYGRGP 122          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.124e-24
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  180 GTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQ 521
            GT    +G I++ ++F+ +L +RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   +P G YA GYC++R+ ++  + Y Y   P  L GQ
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNGY-YGRGPIQLTGQ 131          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.124e-24
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 3
Query:  198 LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            +G I++ ++F ++L +RND RCPA GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ     SD            +YYGRGP
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ--NDQSD------------RYYGRGP 124          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 3
Query:  198 LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGP 539
            +G I++ ++F ++L +RND RCPA GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ     SD            +YYGRGP
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ--NDQSD------------RYYGRGP 124          
The following BLAST results are available for this feature:
BLAST of CX294108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHID_SOLLC1.791e-3053.45Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_POPTR4.876e-2856.19Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI10_ORYSJ4.128e-2745.60Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ7.041e-2750.88Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC7.785e-2650.00Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.328e-2549.17Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC2.265e-2548.33Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY1.124e-2450.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC1.124e-2450.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC3.271e-2449.12Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05011B10SK AbsAOv1 Citrus clementina cDNA clone C05011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294108 ID=CX294108; Name=CX294108; organism=Citrus clementina; type=EST; length=560bp
AATTCGGCCATTTCGGCCGGGGACACCAAGTAAAGGATAATTGATATCAT
AACTCTTGCTTTAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCG
TTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGCATAGAAA
TGATGTACGATGCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAG
AGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGT
CCATGTCCTTTGCCAGGGCAATACTATGGCCGAGGTCCATTCACTCACTT
GGATTGCATT
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