CX294108

Overview
NameCX294108
Unique NameCX294108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  189 GGELG--KIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            GG  G   +++ + FE +LPHR+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C      PC     Y+ RGP
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGP 204          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  189 GGELG--KIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGP 539
            GG  G   +++ + FE +LPHR+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C      PC     Y+ RGP
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGP 204          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.120e-23
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  213 SREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGP 539
            +  MFE +LP+RN+  CP +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++ P SDYC        P    YYGRGP
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGP 177          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.120e-23
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQ--YYGRGPFTHLDCI 560
            C +  +     +G    G  +G +I++ +F  +LP+R++ +CPARGFYTYDAFI AA +FPAFG SG    + +RE+AAFF QT  ETTGG       ++ WGYC+  ++++  S   Y   P  L GQ  Y   G    LD +
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPPYYGRGPIQLTGQSNYQAAGNALGLDLV 154          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.138e-19
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  198 LGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWG 443
            +  +IS  +FE +L HR        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT  ETTGGWP AP G Y  G
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG 74          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.270e-17
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  171 TGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRY-CPCPLPGQYYGRGP 539
            +G+ T       +++  +F+ +  HR D  CP++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I   +   +D+C     PC    +Y  RGP
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGP 241          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGP 539
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+    KREIAAFFA    ET               +CYI ++  P+ +YC       PC     YYGRGP
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGP 170          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGP 539
            CG G   G   +G G  G       +  +++   F  +  ++    C  + FYT  AF+ A K +P F + G++   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINK-SNAYCDPTKRQWPCAAGQKYYGRGP 170          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 44/136 (32.35%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  141 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGP 539
            G G   G    G G+ G  +  +++   F  +  ++    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINK-SNAYCDASNRQWPCAAGQKYYGRGP 181          
BLAST of CX294108 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 47/141 (33.33%), Postives = 65/141 (46.10%), Query Frame = 3
Query:  138 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPHRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGP 539
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA    ET               +CYI +++  + DYC    R  PC     Y+GRGP
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGP 170          
The following BLAST results are available for this feature:
BLAST of CX294108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI7_ORYSJ3.271e-2447.11Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.271e-2447.11Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR2.120e-2345.95Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI8_ORYSJ2.120e-2340.28Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA4.138e-1956.10Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI2.270e-1736.29Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.922e-1637.23Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.199e-1230.99Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE3.751e-1232.35Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA6.398e-1233.33Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05011B10SK AbsAOv1 Citrus clementina cDNA clone C05011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294108 ID=CX294108; Name=CX294108; organism=Citrus clementina; type=EST; length=560bp
AATTCGGCCATTTCGGCCGGGGACACCAAGTAAAGGATAATTGATATCAT
AACTCTTGCTTTAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCG
TTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGCATAGAAA
TGATGTACGATGCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAG
AGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGT
CCATGTCCTTTGCCAGGGCAATACTATGGCCGAGGTCCATTCACTCACTT
GGATTGCATT
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