CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            KQY+RLF M N+ L FTE AL  +AKKA A+ TGARGLR+I+E IL E M+E+P
Sbjct:  332 KQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            KQY+RLF M N+ L FTE AL  +AKKA A+ TGARGLR+I+E IL E M+E+P
Sbjct:  332 KQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_AQUAE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Aquifex aeolicus GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY++LF +  VKL FTEKALR IAK+A  + TGARGLRAI+E I+ + M+E+P +
Sbjct:  328 LVKQYQKLFELEGVKLTFTEKALREIAKEAIRRKTGARGLRAIMEDIMADIMFEVPSL 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio parahaemolyticus GN=clpX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY  LF + N +L F E ALR IAKKA  + TGARGLR+ILES+L E MYE+P
Sbjct:  335 LTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELP 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_EHRCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia chaffeensis (strain Arkansas) GN=clpX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF M+N+ L F + AL VIAKKA  + TGARGLRAILE++L + M+E P
Sbjct:  323 LVKQYKKLFEMDNINLQFDDSALSVIAKKAAVRKTGARGLRAILEALLLDLMFESP 378          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOD6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium difficile (strain 630) GN=clpX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+L  +++V+L F E ALR IAKKA  +NTGARGLR+I+ES++ E M+E+P
Sbjct:  328 LVKQYKKLLELDDVELEFEEGALRAIAKKAIERNTGARGLRSIVESVMMETMFEVP 383          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOB8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=clpX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF +++VKL F EK+L  IA++A ++ TGARGLRAI+E I+ E MYEIP
Sbjct:  327 LVKQYKKLFELDDVKLEFDEKSLIAIAEEAISRQTGARGLRAIIEDIMNEIMYEIP 382          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Schizaphis graminum GN=clpX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+ LF++  VKL FT++A+  IAKKA +K TGARGLR+I+E+IL + MYE+P +K
Sbjct:  337 KQYQTLFNLEKVKLEFTKEAVTSIAKKALSKKTGARGLRSIIENILLDIMYELPSMK 393          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_MESSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mesorhizobium sp. (strain BNC1) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV+L F E ALR IA+KA  + TGARGLR+I+E+IL + M+E+P
Sbjct:  332 LVKQYQRLFEMENVELTFHENALRAIARKAIERKTGARGLRSIMEAILLDTMFELP 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_IDILO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Idiomarina loihiensis GN=clpX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF M +V+L F E ALR IAKKA A+ TGARGLR+I+E +L   MYE+P ++
Sbjct:  331 LTKQYSALFEMEDVELEFREDALRAIAKKAMARKTGARGLRSIVEGVLLGTMYELPSIE 389          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_CAUCR1.997e-1262.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUCN1.997e-1262.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AQUAE1.997e-1258.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBPA2.608e-1262.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EHRCR3.406e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOD63.406e-1258.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOB83.406e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAP3.406e-1257.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MESSB4.448e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_IDILO4.448e-1257.63ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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