CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEFN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella frigidimarina (strain NCIMB 400) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF M +V+L F + AL+ IA+KA ++ TGARGLR+I+ESIL + MY+IP  +
Sbjct:  334 LTKQYSALFEMEDVELEFRDDALQAIAQKAMSRKTGARGLRSIVESILLDTMYDIPSTQ 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOCS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +VKL   E+ALR IA KA  + TGARGLR+I+ESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMEDVKLGIHEEALRSIAVKAIQRKTGARGLRSIMESILLEPMFDLPGLQ 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHISN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium sp. (strain NGR234) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF M +V+L F E ALR IAK+A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  335 KQYQRLFEMEDVELTFHEDALREIAKRAIIRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain KT2440) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  349 LTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 407          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain GB-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  334 LTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSEP1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY +LF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  334 LTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSKK 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSEA6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LFS+ + +L F E AL+ IAKKA ++ TGARGLR+I+E++L + MYE+P +
Sbjct:  334 LTKQYAALFSLEDTELEFREDALQAIAKKAMSRKTGARGLRSIVEAVLLDTMYELPSM 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_OCHA4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +V+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMESVELSFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METFK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY +LF M  V L F E ALR+IAKKA  + TGARGLR+I+E  L E MY++P +
Sbjct:  331 LTKQYIKLFKMEGVDLEFREAALRMIAKKALERKTGARGLRSIMEHALLEIMYDLPSI 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HYDS0 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            KQYK L  M  + L FTE ALR IAK+A  + TGARGLRAI+E I+T+ MYE P +
Sbjct:  322 KQYKELLRMEGIGLEFTEGALREIAKEAIKRKTGARGLRAIVEKIMTDIMYEAPSL 377          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_SHEFN4.918e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOCS4.918e-1157.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHISN4.918e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPK4.918e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPG4.918e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEP14.918e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEA64.918e-1153.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_OCHA44.918e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METFK4.918e-1156.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HYDS04.918e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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