CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_EUBE2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            KQY+ LF ++ V L FT++A+  +A K+  + TGARGLR+ILES++ E MYEIP  +T
Sbjct:  335 KQYQALFGLDEVALEFTDEAVEAVAHKSFERKTGARGLRSILESVMNEVMYEIPSDET 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_DECAR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dechloromonas aromatica (strain RCB) GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY++LFSM +V+L     AL  IAKKA A+ TGARGLR+ILE  L + MYE+P +++
Sbjct:  330 LVKQYQKLFSMEDVELEIRPTALSAIAKKALARKTGARGLRSILEHALLDTMYELPGMES 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACTSZ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+ LF + +V+L FT ++L+ +AKKA A+ TGARGLR+I+E IL + MY++P
Sbjct:  330 LTKQYQALFGLEDVELEFTPESLKAMAKKALARKTGARGLRSIVEGILLDTMYDLP 385          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_EUBE28.388e-1151.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DECAR8.388e-1155.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACTSZ8.388e-1153.57ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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