CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HAES2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Haemophilus somnus (strain 2336) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 31/59 (52.54%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+ LFS+ N++L FT++AL  +AKKA A+ TGARGLR+I+E++L + MY++P ++
Sbjct:  332 LTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HAES1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Haemophilus somnus (strain 129Pt) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 31/59 (52.54%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+ LFS+ N++L FT++AL  +AKKA A+ TGARGLR+I+E++L + MY++P ++
Sbjct:  332 LTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ALCBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY RLF M  V+L F E AL+ IA KA  + TGARGLR+ILES+L + MY++P +++
Sbjct:  334 LTKQYARLFEMEGVELDFREDALKAIANKAMVRKTGARGLRSILESVLLDTMYQVPSMES 393          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIF5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY++LF++  V L F  +ALR IAKKA A+ TGARGLR+ILE IL + MYE+P +
Sbjct:  331 LVKQYQKLFALEGVTLEFRTEALRAIAKKALARKTGARGLRSILEQILLDTMYELPSM 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIF2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY++LF++  V L F  +ALR IAKKA A+ TGARGLR+ILE IL + MYE+P +
Sbjct:  331 LVKQYQKLFALEGVTLEFRTEALRAIAKKALARKTGARGLRSILEQILLDTMYELPSM 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_THETN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermoanaerobacter tengcongensis GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY++LF M+ VKL F +KAL +IA+ A  + TGARGLRAILE I+ + MYEIP  +T
Sbjct:  327 LVKQYEKLFEMDGVKLEFEKKALDLIAEMALERGTGARGLRAILEDIMLDVMYEIPSDET 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_OLICO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENVELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_NITHX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  IA+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAIARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_HAES25.809e-1252.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HAES15.809e-1252.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALCBS5.809e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIF55.809e-1258.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIF25.809e-1258.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THETN7.587e-1258.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPT7.587e-1255.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPA7.587e-1255.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_OLICO7.587e-1255.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NITHX7.587e-1255.93ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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