CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_NITWN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_GEOLS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY++LF M  V+L FT+ AL  IAK+A  +NTGARGLRAILE  + + MYEIP   T
Sbjct:  330 LTKQYQKLFDMEGVRLRFTDGALVSIAKEALKRNTGARGLRAILEGAMLDIMYEIPSQNT 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  340 KQYQTLFELENVKLEFNAESIQLIAKKAINKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  340 KQYQTLFELENVKLEFNAESIQLIAKKAMNKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BUCA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            KQY+ LF + NVKL F  +++++IAKKA  KNTGARGLR+I+E IL   MYE+P +
Sbjct:  340 KQYQTLFELENVKLEFNAESIQLIAKKAMNKNTGARGLRSIIEGILLNIMYELPSM 395          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRASB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ALKOO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alkaliphilus oremlandii (strain OhILAs) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYKRLF ++ V L   E+ALR+IAKKA  + TGARGLR I+E I+ + MYEIP
Sbjct:  328 LTKQYKRLFEIDGVHLEIEEEALRLIAKKAIERKTGARGLRGIVEGIMMDTMYEIP 383          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_AGRVS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P+++
Sbjct:  333 LVKQYQRLFEMEDVELSFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPELE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AYE) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=clpX PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_NITWN9.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOLS9.909e-1258.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAT9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAI9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCA59.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRASB9.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALKOO9.909e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRVS9.909e-1255.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBY9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBT9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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