CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain SDF) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ACICU) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB0057) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB307-0294) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L +QY+ LF+M NV L F + ALR +AK+A  +NTGARGLR+ILE++L E MY++P
Sbjct:  331 LTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGARGLRSILENVLLETMYDLP 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PHEZH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Phenylobacterium zucineum (strain HLK1) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            KQY RLF M NV L FTE AL  +A+KA  + TGARGLR+ILE +L + MYE+P
Sbjct:  332 KQYVRLFEMENVGLTFTEDALMAVARKAIQRKTGARGLRSILEGVLLDTMYELP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METRJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY+RLF M NV L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P +++
Sbjct:  330 LVKQYQRLFEMENVDLTFQDEALSLVARKAIERKTGARGLRSILETILLDTMYDLPGLES 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BEII9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M N +L F ++AL V+AKKA  + TGARGLR+I+ESIL + M+++P
Sbjct:  330 LVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGARGLRSIMESILLDTMFDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHESW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain W3-18-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS195) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_ACIBS9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBC9.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB59.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB39.909e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PHEZH1.294e-1161.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METRJ1.294e-1153.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BEII91.294e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESW1.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEPC1.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB91.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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