CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOTE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium tetani GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF M+NV L F E+AL+ IA++A  ++TGARGLR+I+E I+ + M+EIP
Sbjct:  329 LVKQYKKLFEMDNVHLEFKEEALKAIAEEAIRRSTGARGLRSIIEEIMKDIMFEIP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  335 LTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  335 LTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBC3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF + NV L F E AL+ IA KA  + TGARGLR+ILE++L E MYE+P ++
Sbjct:  335 LTKQYAALFELENVDLEFREDALKAIAAKAMKRKTGARGLRSILEAVLLETMYELPSME 393          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SILST (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter sp. (strain TM1040) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY+RLF + + +L FT++AL  IAKKA  + TGARGLR+ILE IL + M+E+P +++
Sbjct:  331 LVKQYQRLFELEDTELDFTDEALSAIAKKAIERKTGARGLRSILEDILLDTMFELPGMES 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSEPW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas putida (strain W619) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY RLF M +V L F   AL+ +A+KA  + TGARGLR+ILE +L + MYEIP  K
Sbjct:  334 LTKQYARLFEMESVDLEFRSDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSQK 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HALOH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+ F M+NV+L FT +AL  IA+KA  +NTGARGLRA++E  + + MY++P
Sbjct:  328 LVKQYKKFFEMDNVELEFTPEALTAIAQKALERNTGARGLRAVVEEAILDIMYDLP 383          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_EHRCJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia canis (strain Jake) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF M+N+ L F + AL  IAKKA  + TGARGLRAILE++L + M+E P
Sbjct:  323 LVKQYKKLFEMDNIDLQFDDSALSEIAKKAAVRKTGARGLRAILEALLLDLMFESP 378          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUO2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_CLOTE1.690e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBCM2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBCH2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBC32.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILST2.207e-1153.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEPW2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HALOH2.207e-1155.36ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EHRCJ2.207e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUO22.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUME2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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