CX294112

Overview
NameCX294112
Unique NameCX294112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294112 vs. ExPASy Swiss-Prot
Match: RL21_SULTO (50S ribosomal protein L21e OS=Sulfolobus tokodaii GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   79 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHV 351
            G R+RTR L  +  R++G +P LS  +  +K GDYV +K+N +VHKGMPH+ YHG+ G +    KR     +   +G++  +K I VR EH+
Sbjct:    7 GYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQG--KRGKAYIVRVTLGDK--EKVIIVRPEHL 94          
BLAST of CX294112 vs. ExPASy Swiss-Prot
Match: RL21_AERPE (50S ribosomal protein L21e OS=Aeropyrum pernix GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   70 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHK-GMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 357
            A  G R+RTR L  +P R+KG IP LSTYLR Y++GD V + +N +    GMPH+ +HG TG V  V KR    E+   +G +  +K + V   H++P
Sbjct:    4 APRGYRNRTRRLLRKPVREKGSIPRLSTYLREYRVGDKVAIIINPSFPDWGMPHRRFHGLTGTV--VGKRGEAYEVEVYLGRK--RKTLFVPPVHLKP 97          
BLAST of CX294112 vs. ExPASy Swiss-Prot
Match: RL21_METTP (50S ribosomal protein L21e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl21e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   64 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRII 318
            MP  HG R  TRD   +  R++G  P+   ++ + +G+ V + ++ ++HKGMPH  +HGRTG V     RA  +E+  Q   +++
Sbjct:    1 MPKSHGFRKNTRDKLKKSVRERGISPVVRAIQDFAVGEKVHIIIDPSIHKGMPHPKFHGRTGTVVGRRGRAYVLEVPDQSAKKLV 85          
The following BLAST results are available for this feature:
BLAST of CX294112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL21_SULTO2.098e-1141.3050S ribosomal protein L21e OS=Sulfolobus tokodaii ... [more]
RL21_AERPE2.098e-1142.8650S ribosomal protein L21e OS=Aeropyrum pernix GN=... [more]
RL21_METTP7.972e-1134.1250S ribosomal protein L21e OS=Methanosaeta thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011C02SK AbsAOv1 Citrus clementina cDNA clone C05011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294112 ID=CX294112; Name=CX294112; organism=Citrus clementina; type=EST; length=591bp
GGCTACACACACTCACATCTCCTTCCTCTTCACCAGAGAGAAAAAAGGGC
CAGTGACTCAAACATGCCGGCCGGTCACGGTTTGAGGTCCCGAACAAGGG
ATTTGTTCGCACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTCCACT
TACCTTAGGACTTACAAAATCGGCGACTACGTTGACGTCAAAGTGAACGG
CGCCGTTCACAAAGGTATGCCCCACAAGTTCTACCATGGACGTACCGGCC
GTGTCTGGAATGTCACCAAGCGCGCCATCGGCGTCGAGATTAACAAGCAG
GTTGGTAACAGGATCATCAAGAAGAGGATTCATGTTCGCGTGGAGCATGT
TCAACCTTCAAGGTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAGAATG
ATGAACTCAAGGCAGATGCTAAGGCAAGAGGTGAGGTCATCAGTACAAAG
AGGCAGCCAAAGGGCCCTAAACCTGGTTTCATGGTGGAAGGTGCAACATT
GGAAACTGTCACTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGTG
GTTACTAGGTTATCTTTTTGGTATGGTGCTGTTTTGTACTT
back to top