CX294121

Overview
NameCX294121
Unique NameCX294121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2A5_ARATH (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Arabidopsis thaliana GN=PP2A5 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RG  +TFG D  T F   + L L+ RAHQ+V +G+ +   + +VT+FSAPNYC    N  A++ + E +  +F    P+ ++
Sbjct:  212 RGAGYTFGQDIATQFNHTNGLSLISRAHQLVMEGFNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQ 293          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  +TFG D    F   ++L LV RAHQ+V +GY +   +++VTIFSAPNYC    N  +++ VD+    +F   +P+ ++ +
Sbjct:  219 RGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGE 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2A_HELAN (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RG  +TFG D    F   + L L+ RAHQ+V +GY +     +VTIFSAPNYC    N  A++ V E +  +F    P+ ++
Sbjct:  210 RGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWSQENNVVTIFSAPNYCYRCGNMAAILEVGENMDQNFLQFDPAPRQ 291          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  +TFG D    F   ++L L+ RAHQ+V DG+ +   +++VTIFSAPNYC    N  +++ VD+    +F   +P+ ++ +
Sbjct:  218 RGAGYTFGQDISEQFNHTNNLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGE 301          
The following BLAST results are available for this feature:
BLAST of CX294121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
PP2A5_ARATH5.982e-1136.59Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP2A4_ORYSJ5.982e-1138.10Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A_HELAN7.813e-1139.02Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A3_ARATH7.813e-1136.90Serine/threonine-protein phosphatase PP2A-3 cataly... [more]

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Properties
Property NameValue
Genbank descriptionC05011D02SK AbsAOv1 Citrus clementina cDNA clone C05011D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294121 ID=CX294121; Name=CX294121; organism=Citrus clementina; type=EST; length=521bp
AGGGGAGTTTCATTTACTTTTGGTGCTGACAAAGTGACAGACTTTCTGCA
GAAGCATGATCTGGATCTCGTTTGTCGTGCTCACCAGGTCGTAGAGGATG
GATATGAGTTCTTTGCCAACCGACAGCTTGTTACTATTTTTTCAGCACCT
AATTATTGCGGGGAGTTTGATAATGCTGGTGCAATGATGTCTGTTGATGA
GACACTAATGTGCTCTTTCCAAATATTAAAGCCCTCAGACAAGAAGTCGA
AGTTCGGTTTTGGGAGCACAACTACTGCAAAGCCTTCCAACGGTGGCAAT
GTCTTTGGAAGCACAACTACAGCCAAGCCTGGAAACACACCTGCAGGAGT
CAAGTCTTTCCTTGGTAAGGTATGACAAATTGGTTTGCTGGATAGAGGCC
AACTTCCAGTGGGTTAATGCACATGCGGGGGACTGCAATTAAAGTAATAT
TCTCAGGTCTTTTTGATTTTTCTATAATATTTTGAATTGTATAAAATTGC
GACAGCAAGAGAAAAGAAGTC
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