CX294121

Overview
NameCX294121
Unique NameCX294121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1G_RAT (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Rattus norvegicus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1G_MOUSE (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Mus musculus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1G_HUMAN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Homo sapiens GN=PPP1CC PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1G_BOVIN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Bos taurus GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1GB_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B OS=Xenopus laevis GN=ppp1cc-B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1GA_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A OS=Xenopus laevis GN=ppp1cc-A PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP++KK
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 71/85 (83.53%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFGADKV +FL K+D+DLVCRAHQVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGA+MSVDE+LMCSFQILKP D++S+F
Sbjct:  227 RGVSYTFGADKVAEFLIKNDMDLVCRAHQVVEDGYEFFADRQLVTMFSAPNYCGEFDNAGALMSVDESLMCSFQILKPVDRRSRF 311          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RGVSFTFGA+ V  FLQKHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVD TLMCSFQILKP +K+ K
Sbjct:  219 RGVSFTFGAEVVVKFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVEKRKK 302          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1_BRAOL (Serine/threonine-protein phosphatase PP1 OS=Brassica oleracea GN=PP1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.860e-37
Identity = 69/82 (84.15%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKK 246
            RGVS+TFGAD V +FLQK+D+DL+CRAHQVVEDGYEFFA RQ+VT+FSAPNYCGEFDNAGAMMS+DE+LMCSFQILKPS+KK
Sbjct:  235 RGVSYTFGADTVAEFLQKNDMDLICRAHQVVEDGYEFFAERQVVTVFSAPNYCGEFDNAGAMMSIDESLMCSFQILKPSEKK 316          
The following BLAST results are available for this feature:
BLAST of CX294121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
PP1G_RAT2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_MOUSE2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_HUMAN2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_CANFA2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_BOVIN2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GB_XENLA2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GA_XENLA2.181e-3787.80Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP15_ARATH2.181e-3783.53Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PP13_DROME2.849e-3785.71Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP1_BRAOL4.860e-3784.15Serine/threonine-protein phosphatase PP1 OS=Brassi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D02SK AbsAOv1 Citrus clementina cDNA clone C05011D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294121 ID=CX294121; Name=CX294121; organism=Citrus clementina; type=EST; length=521bp
AGGGGAGTTTCATTTACTTTTGGTGCTGACAAAGTGACAGACTTTCTGCA
GAAGCATGATCTGGATCTCGTTTGTCGTGCTCACCAGGTCGTAGAGGATG
GATATGAGTTCTTTGCCAACCGACAGCTTGTTACTATTTTTTCAGCACCT
AATTATTGCGGGGAGTTTGATAATGCTGGTGCAATGATGTCTGTTGATGA
GACACTAATGTGCTCTTTCCAAATATTAAAGCCCTCAGACAAGAAGTCGA
AGTTCGGTTTTGGGAGCACAACTACTGCAAAGCCTTCCAACGGTGGCAAT
GTCTTTGGAAGCACAACTACAGCCAAGCCTGGAAACACACCTGCAGGAGT
CAAGTCTTTCCTTGGTAAGGTATGACAAATTGGTTTGCTGGATAGAGGCC
AACTTCCAGTGGGTTAATGCACATGCGGGGGACTGCAATTAAAGTAATAT
TCTCAGGTCTTTTTGATTTTTCTATAATATTTTGAATTGTATAAAATTGC
GACAGCAAGAGAAAAGAAGTC
back to top