CX294121

Overview
NameCX294121
Unique NameCX294121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FGAD    F + + +DL+CRAHQ+V +GY++  N +++T++SAPNYC    N  A++ +DE L   F I + + ++++
Sbjct:  237 RGAGYLFGADASKTFCEANSVDLICRAHQLVMEGYKWHFNEKVLTVWSAPNYCYRCGNVAAILELDENLNREFTIFEAAPQENR 320          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis elegans GN=pph-4.1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FGAD    F + + +DL+CRAHQ+V +GY++  N +++T++SAPNYC    N  A++ +DE L   F I + + ++++
Sbjct:  237 RGAGYLFGADASKTFCETNGVDLICRAHQLVMEGYKWHFNEKVLTVWSAPNYCYRCGNVAAILELDENLNKEFTIFEAAPQENR 320          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: BSL1_ARATH (Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   16 TFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 234
            TFG D+VT+F +++ L L+ RAH+ V DG+E FA  QL+T+FSA NYCG  +NAGA++ V   L+   +++ P
Sbjct:  760 TFGPDRVTEFCKRNKLQLIIRAHECVMDGFERFAPGQLITLFSATNYCGTANNAGAILVVGRGLVIVPKLIHP 832          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FG+D V  F   +D+D+ CRAHQ+V +GY++  N  ++T++SAPNYC    N  A++ +DE L   F I + + ++++
Sbjct:  211 RGAGYLFGSDVVAQFNAANDIDMTCRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETR 294          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C_DROME (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Drosophila melanogaster GN=Pp4-19C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 31/84 (36.90%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FG+D V+ F + +D+D++CRAHQ+V +G+++  N  ++T++SAPNYC    N  A++ ++E L   F I + + ++S+
Sbjct:  211 RGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFNETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQESR 294          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C_XENTR (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus tropicalis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FG+D V  F   +++D++CRAHQ+V +GY++  N  ++T++SAPNYC    N  A++ +DE L   F I + + ++++
Sbjct:  211 RGAGYLFGSDVVAQFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKEFIIFEAAPQETR 294          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP4C_XENLA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  + FG+D V  F   +++D++CRAHQ+V +GY++  N  ++T++SAPNYC    N  A++ +DE L   F I + + ++++
Sbjct:  211 RGAGYLFGSDVVAQFNAANNIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKEFIIFEAAPQETR 294          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  +TFG D    F   + L LV RAHQ+V +GY +  +R +VTIFSAPNYC    N  A+M +D+TL  SF    P+ ++ +
Sbjct:  214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 297          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  +TFG D    F   + L LV RAHQ+V +GY +  +R +VTIFSAPNYC    N  A+M +D+TL  SF    P+ ++ +
Sbjct:  214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 297          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP2AB_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (Fragment) OS=Sus scrofa GN=PPP2CB PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSK 252
            RG  +TFG D    F   + L LV RAHQ+V +GY +  +R +VTIFSAPNYC    N  A+M +D+TL  SF    P+ ++ +
Sbjct:  198 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 281          
The following BLAST results are available for this feature:
BLAST of CX294121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
PP4C1_CAEBR9.860e-1438.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C1_CAEEL1.288e-1338.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
BSL1_ARATH1.288e-1347.95Serine/threonine-protein phosphatase BSL1 OS=Arabi... [more]
PP4C_RAT2.197e-1338.10Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_DROME2.869e-1336.90Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENTR3.747e-1336.90Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENLA3.747e-1336.90Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2AB_RAT3.747e-1344.05Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_RABIT3.747e-1344.05Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_PIG3.747e-1344.05Serine/threonine-protein phosphatase 2A catalytic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D02SK AbsAOv1 Citrus clementina cDNA clone C05011D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294121 ID=CX294121; Name=CX294121; organism=Citrus clementina; type=EST; length=521bp
AGGGGAGTTTCATTTACTTTTGGTGCTGACAAAGTGACAGACTTTCTGCA
GAAGCATGATCTGGATCTCGTTTGTCGTGCTCACCAGGTCGTAGAGGATG
GATATGAGTTCTTTGCCAACCGACAGCTTGTTACTATTTTTTCAGCACCT
AATTATTGCGGGGAGTTTGATAATGCTGGTGCAATGATGTCTGTTGATGA
GACACTAATGTGCTCTTTCCAAATATTAAAGCCCTCAGACAAGAAGTCGA
AGTTCGGTTTTGGGAGCACAACTACTGCAAAGCCTTCCAACGGTGGCAAT
GTCTTTGGAAGCACAACTACAGCCAAGCCTGGAAACACACCTGCAGGAGT
CAAGTCTTTCCTTGGTAAGGTATGACAAATTGGTTTGCTGGATAGAGGCC
AACTTCCAGTGGGTTAATGCACATGCGGGGGACTGCAATTAAAGTAATAT
TCTCAGGTCTTTTTGATTTTTCTATAATATTTTGAATTGTATAAAATTGC
GACAGCAAGAGAAAAGAAGTC
back to top