CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   94 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            +I G  GT +EGG F + L   +D+P+ PPK  F    FHPNV  +G +C++ L +D  W+P + +KQ+L+ ++ LL  PNP      E   L ++   +Y +R +
Sbjct:   49 SIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKD--WKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAK 152          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   94 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            TI G  GT + GG F + L   +D+P+ PPK  F    FHPNV P+G +C+++L  D  W   + ++ +L+ I+ LL  PNP      E   L +++  EY  R R
Sbjct:   46 TIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            NL  W  T+ G  G+ +E G F + +    DYP KPP  KF    +HPN+  S G +C  + +    W P + +  +L  I+ +L  PNP +P +TE    F  D   + +  ++  K+Y
Sbjct:   30 NLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST---WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKY 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   94 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            TI G  GT + GG F + L   +D+P+ PPK  F    FHPNV P+G +C+++L  D  W   + ++ +L+ I+ LL  PNP      E   L +++  EY  R R
Sbjct:   46 TIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   94 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            T  G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P IT+K  L+ +Q LL  P P DP   E    +++D   + +      + Y
Sbjct:   38 TFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY 148          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            PD S N   +H  I G   + +EGG F L L   E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 120          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            PD S N   +H  I G   + +EGG F L L   E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 120          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            PD S N   +H  I G   + +EGG F L L   E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 120          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            PD S N   +H  I G   + +EGG F L L   E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 120          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            PD S N   +H  I G   + +EGG F L L   E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 120          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBE2S_NEMVE4.983e-1535.85Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBE2S_MOUSE4.983e-1536.79Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBCB_DICDI4.983e-1531.67Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UB2SA_XENLA4.983e-1536.79Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBC1_YEAST6.508e-1535.40Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2N_RAT8.500e-1542.27Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB8.500e-1542.27Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE8.500e-1542.27Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN8.500e-1542.27Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN8.500e-1542.27Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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