CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            N+  ++  I G   + +EGG F L L   E+YP   PK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 122          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 348
            N+  ++  I G   + +EGG F L L   E+YP   PK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  PNP DP
Sbjct:   33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDP 122          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   88 HCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRR 405
            H +I G  GT + GG F + L   +D+P+ PP+  F    FHPNV   G +C+++L  D  W+  + ++ +L+ I+ LL  PNP      E   L ++D  EY  R
Sbjct:   44 HTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRD--WKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASR 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  121 WEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            ++GG F  T  F E YP  PPK       FHPN+ P G +CL+IL ED  W PA+ ++ I++G+  L  +PN  DP   E   +  +D  E+   VR
Sbjct:   76 YKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILRED--WSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   52 TLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLF 375
            TL D S +L  W   I G   T +EGG+F   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  +   +F
Sbjct:   31 TLVDES-DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   52 TLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLF 375
            TL D S +L  W   I G   T +EGG+F   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  +   +F
Sbjct:   31 TLVDES-DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   52 TLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLF 375
            TL D S +L  W   I G   T +EGG+F   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  +   +F
Sbjct:   31 TLVDES-DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   97 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            I G A T +E G F L +   E YP +PP+ +F    +HPN+  +G +CL +L       WRP++ +  +L  IQ L+ +PNP DP   +    F  +   + +  RQ  +++
Sbjct:   38 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 150          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTE 360
            +L  W   I G   T +EGG+F   L F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  +
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVD 143          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTE 360
            +L  W   I G   T +EGG+F   L F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  +
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVD 143          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC36_ARATH1.227e-1339.13Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH1.227e-1339.13Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2S_DANRE1.603e-1334.91Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC12_CANGA1.603e-1339.18NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UB2R2_RABIT2.734e-1335.29Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE2.734e-1335.29Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN2.734e-1335.29Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBE2T_HUMAN4.664e-1331.86Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UB2R1_MOUSE4.664e-1335.51Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN4.664e-1335.51Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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