CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 1
Query:   97 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            + G AGT +EGG+F   L  S D+P  PPK  F    FHPNV   G +C++ L +D  W   + +K IL+ I+ LL  PN       +   L +++  +Y +  +
Sbjct:   45 VTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKD--WTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 49/132 (37.12%), Postives = 60/132 (45.45%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A PE     S NL  W  TI G AGT +E   + L+L F   YP   P  KF    +HPNV   G +CL IL +   W     V+ IL+ IQ LL +PN   P  T    L+    A  K      +KQ
Sbjct:   49 GISAFPE-----SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDK--WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQ 173          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 49/132 (37.12%), Postives = 60/132 (45.45%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A PE     S NL  W  TI G AGT +E   + L+L F   YP   P  KF    +HPNV   G +CL IL +   W     V+ IL+ IQ LL +PN   P  T    L+    A  K      +KQ
Sbjct:   49 GISAFPE-----SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDK--WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQ 173          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 49/132 (37.12%), Postives = 60/132 (45.45%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A PE     S NL  W  TI G AGT +E   + L+L F   YP   P  KF    +HPNV   G +CL IL +   W     V+ IL+ IQ LL +PN   P  T    L+    A  K      +KQ
Sbjct:   49 GISAFPE-----SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDK--WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQ 173          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 423
            PD  +N  +  C   G     ++ G F  +    + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP DP   E   +   +   +++ V++  +
Sbjct:   54 PDDLLNFKLVICPDEGF----YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 423
            PD  +N  +  C   G     ++ G F  +    + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP DP   E   +   +   +++ V++  +
Sbjct:   54 PDDLLNFKLVICPDEGF----YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 423
            PD  +N  +  C   G     ++ G F  +    + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP DP   E   +   +   +++ V++  +
Sbjct:   54 PDDLLNFKLVICPDEGF----YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHL 372
            N+  W   I G + T +EGG F L     E YP +PP+ +F    FHPNV + +G +CL IL   N W PA T++ +   I  L+  P P  P   +  +L
Sbjct:   33 NIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 131          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/126 (29.37%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   55 LPDGSVNLMVWHCTI-PGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            L     N++VWH  + P +     +   F L + F  +YP KPP  +F    +HPN+   G VCL +++ +N W+P     Q+L  +  L+ +PN  +P + E   L  QD   ++++  +   QY
Sbjct:   25 LSSDDANVLVWHMLLLPDQLPYRLKA--FGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTEN-WKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQY 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  130 GFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            G     L F+E YP +PPK    +  FHPN+   G VCL+IL ED  W PA+ ++ I+ G+  L  +PNP DP   +   L  +   E+   VR
Sbjct:   78 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBE2S_DICDI1.357e-1234.29Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBE2C_MOUSE1.357e-1237.12Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA1.357e-1237.12Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.357e-1237.12Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC12_MOUSE1.357e-1231.15NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN1.357e-1231.15NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN1.357e-1231.15NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC21_ARATH3.023e-1236.63Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UB2L6_RAT3.023e-1229.37Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC12_YEAST6.735e-1238.30NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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