CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.398e-25
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+MVW+  I G  GT +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+ +W+  I G   T W+GG F LTL F+EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA +E   ++ ++  EY R+VR+  +Q
Sbjct:   32 NITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.061e-25
Identity = 61/132 (46.21%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  LPD   N+MVW+  I G A T +E G F L L F EDYP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  E   LF    ++Y +RV++  ++
Sbjct:   23 GVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA ++   L+ ++  EY++RV    +Q
Sbjct:   32 NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  LPD   N+MVW+  I G A T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  E   LF    ++Y +RV++  ++
Sbjct:   23 GVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  LPD   N+MVW+  I G A T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  E   LF    ++Y +RV++  ++
Sbjct:   23 GVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBE2A_HUMAN1.398e-2545.76Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_WHEAT1.826e-2544.92Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_CANGA9.061e-2546.21Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBE2B_RAT1.546e-2444.92Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.546e-2444.92Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.546e-2444.92Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.546e-2444.92Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.546e-2444.92Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_YEAST2.019e-2445.45Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO2.019e-2445.45Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
back to top