CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  103 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            G   + ++GG + + +  +E YP K P   F    +HPNV   SG+VCL ++N+   W P   +  I  V +  LL  PNP+DP   E   L ++D   Y+ +V++  ++Y
Sbjct:   38 GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQT--WSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERY 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  121 WEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            + GG F  ++ F + YP +PP  K     +HPN+  SG +CL++L ED  W P + ++ +++G+  L  +PN +DP   +     ++D   ++  V+
Sbjct:   72 YRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLRED--WSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQ 166          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 34/121 (28.10%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   55 LPDGSVNLMVWHCTI-PGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            L     N++VWH  + P +     +   F + + F  +YP KPP  +F    +HPNV   G VCL +++ +N W+P     Q+L  +  L+ +PN  +P + E   L  Q+   ++++  +
Sbjct:   25 LSSDDANVLVWHMLLLPDQLPYGLKA--FQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNEN-WKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEE 142          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/120 (30.00%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   73 NLMVWHCTI-PGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N++VWH  + P +   + +   F L + F  +YP +PP  KF    +HPNV   G VCL I+++ N W+ +    Q+L  +  L++QP P  P + E      QD   + +  ++   Q+
Sbjct:   31 NVLVWHALLLPERPPYNLKA--FRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKN-WKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQF 147          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC4_WHEAT9.726e-1132.43Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_ASHGO9.726e-1129.90NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UB2L6_MOUSE9.726e-1128.10Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UB2L6_BOVIN9.726e-1130.00Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
back to top