CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  LPD   N+M+W+  I G A T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  E   LF    ++Y +RV++  ++
Sbjct:   23 GVSASP--LPD---NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.002e-23
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N++ W   I G   T +E G F L+L F+E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +    L+ ++  EY++RV+Q  +Q
Sbjct:   32 NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL--QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.709e-23
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            N+MVW+  I G   T +E G F LTL F++ YP+KPP  +F    FHPN+Y +G +CL IL   N W P   V  IL  +Q LL+ PNPA PA  +   LF ++  EY+RRV++
Sbjct:   32 NIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL--QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 55/113 (48.67%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            NLM+W+  I G A T +E G F L L F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL  PNP  PA  E   L+ ++  EY RRV+
Sbjct:   32 NLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G A T +E G F L +HF E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  E  +L+  +  EY +RVR+  ++
Sbjct:   32 NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M W+  I G A T +E G F L +HF E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  E  +L+  +  EY +RVR+  ++
Sbjct:   32 NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 56/116 (48.28%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   67 SVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            S N+M+W+  I G A T +E G F L L F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN A PA  E   L  ++  EY RRVR+
Sbjct:   30 SDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRK 143          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.972e-23
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+M+W+  I G   T +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G +CL IL   N W P   V  IL  IQ LL  PNP  PA +    L+ ++  EY++RV+   +Q
Sbjct:   32 NIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL--QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  +PD   N+M W+  I G A T +E G F L + F E YP+KPP+ KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN   PA  E  +L+  +  EY +RVR+  ++
Sbjct:   23 GVSASP--VPD---NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 59/128 (46.09%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            G  A P  LPD   N+M W+  I G A T +E G F L L F E YP+KPP  KF    FHPNVY SG +CL IL   N W P   V  IL  IQ LL+ PN + PA  E  +L+    ++Y +RVR+
Sbjct:   23 GVSASP--LPD---NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDIL--QNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC2_KLULA2.636e-2444.70Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC1_CAEEL1.002e-2344.92Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_CRYNE1.709e-2345.61Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_USTMA2.232e-2348.67Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_EMENI2.915e-2344.92Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.915e-2344.92Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_SCHPO3.807e-2348.28Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBCD6_DROME4.972e-2343.22Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_NECHA6.493e-2342.42Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_DEBHA6.493e-2346.09Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
back to top