CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.599e-21
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G + + + GG F +T+HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            ++  W  TI G A + + GG F +T+HF  DYP KPPK  F    +HPN+  +G++CL IL E   W PA+TV ++L+ I  LL  PNP DP   E  H++  D  +Y+   +   ++Y
Sbjct:   29 DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQ--WSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G + + + GG F +T+HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   33 WQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            P    +   W C I G  GT +EGG +P TL F  DYP  PP  KF   FFHPNVY  GTVC+SIL           +    W P  +V++IL+ +  +L +PN    A  +   ++ +D  EY R VR+ A++
Sbjct:   29 PSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.563e-21
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + + GG F L +HF  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP +P   E  H++  D A Y+   R+  ++Y
Sbjct:   29 DLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G + + + GG F L +HF  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP DP   E  H++    A+Y+   R+  ++Y
Sbjct:   29 DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + + GG F +++HF  DYP KPPK  F    +HPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D ++Y+   R   ++Y
Sbjct:   33 WQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC9_ARATH1.599e-2140.87SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH2.089e-2139.50Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC10_ARATH2.089e-2140.87Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC7_SCHPO2.728e-2138.06Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC1_COLGL3.563e-2137.82Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_MAGGR6.078e-2137.82Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC11_ARATH6.078e-2139.13Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D1_MOUSE6.078e-2139.50Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.078e-2139.50Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN6.078e-2139.50Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
back to top