CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y    R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.768e-20
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  +I G A + + GG F L++HF  DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   E  H++  D  +Y+   R+  K+Y
Sbjct:   30 DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D   Y +  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + + GG F + +HF  DYP KPPK  F    FHPN+  +G +CL IL +   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   33 WQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBCD1_DROME1.354e-2038.66Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_XENLA1.354e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.354e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.354e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.354e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.354e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_YEAST1.768e-2038.66Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_CAEEL2.309e-2038.66Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC29_ARATH3.016e-2039.13Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UB2D3_RAT3.016e-2040.00Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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