CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  +I G + + + GG F L++HF  DYP KPPK  F    +HPN+  SG +CL IL +   W PA+T+ ++L+ I  LL   NP DP   E   ++  D A+Y+   ++  K+Y
Sbjct:   30 DLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKY 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   52 TLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            ++   S N+  W   I G  GT +EGG F L++ F  DYP KPPK  F    +HPN+   G++C++IL +   W PA+ V+++L+ I  LL++PNP DP   E   LF  +  ++ +R R+
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDK--WTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRARE 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            P    ++  W  TI G   + + GG F +++ FS DYP KPPK  F    +HPN+   G++CL IL E   W PA T  ++L+ I  LL  PNP DP   E  HL+  D ++Y+   ++  ++Y
Sbjct:   25 PVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQ--WSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKY 146          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ--WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ--WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UB2D3_PONAB3.016e-2040.00Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE3.016e-2040.00Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA3.016e-2040.00Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN3.016e-2040.00Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG3.016e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC5_YEAST8.776e-2037.82Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC31_ARATH8.776e-2038.02Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC12_ARATH8.776e-2037.10Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
U2D2B_RAT8.776e-2039.13Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE8.776e-2039.13Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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