CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  +I G   + + GG F L++HF  DYP KPPK       +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   E  H++ QD  +Y+   ++  K+Y
Sbjct:   29 DLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQ--WSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  + ++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   83 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 199          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   83 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 199          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            NL  W  TI G  G+ +EGG F L +HFS +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++Q+  E+ R  R   K+Y
Sbjct:  114 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRY 230          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---------EDNG--WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            ++  W   I G   T +EGGFF  TL F +DYP  PPK KF    +HPNV+P+G VC+SIL+         ED G  W P  + + IL+ +  +L  PN   PA  +    F ++  E+K+RVR+  ++
Sbjct:   34 SIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRR 162          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 191          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC4_CANAL1.146e-1936.97Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D3_BOVIN1.955e-1939.13Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UB2E3_MOUSE3.335e-1940.34Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN3.335e-1940.34Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.335e-1940.34Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E2_MOUSE3.335e-1940.34Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN3.335e-1940.34Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBCD2_DROME5.688e-1940.34Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC15_SCHPO5.688e-1937.98Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2E1_MOUSE2.162e-1838.66Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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