CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            N+  W  TI G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 191          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            PD   NL+ W  TI G + T +EG  F +++ F  +YP  PP   F    +HPNV  SG +CL IL +   W     V+ IL+ +Q LL +PN A P   +   L+ +D  EYKR + Q+ K+
Sbjct:   52 PDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDK--WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKE 172          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 423
            N+  W  TI G   T +EG  + L+L FS DYP KPPK KF    FHPNV   G +CL IL +   W  A  V+ IL+ IQ LL +PN + P  T+   L+  +  EY++ V +  K
Sbjct:   63 NIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW-SNQEEYRKMVEKLYK 176          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.390e-17
Identity = 42/129 (32.56%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            P    N+ +W C I G   T +  G F   L F +DYP  PPK  F     HPN+YP+G VC+SIL+            +  W P  +V++IL+ +  +L +PN    A  +   L+  +  E++R+V+
Sbjct:   28 PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL---NEDNG-------WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPALL 441
            N+  W  TI G   T ++GG+F   + F ++YP+ PP  +F    +HPNVYP G VC+SI    ++ NG       W P  TV+ I++ I  +L  PN   PA  E    + +   E+K++VR+  ++   +L
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRV 408
            N+  W  TI G   T +EGGFF   + F ++YP+ PP  +F    +HPNVYP G VC+SIL+               W P  TV+ I++ I  +L  PN   PA  E    + +   E+K++V
Sbjct:   33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKV 155          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   58 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 423
            PDG  NL  W  T+ G   T +E   + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P   +   ++  +  EYK+ + ++ K
Sbjct:   54 PDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 171          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG------WRPAITVKQILVGIQDLLDQPNPADPAQTEG-----YHLFIQDAAEYKRRVRQQAKQ 426
            N+  W   + G   T +EGG F   + F  +YP  PPK  F    +HPN+YP G +C+SIL+ DN       W PA  +  IL+ +  LL++PNP  PA  +       +++ +D   Y   V++  K+
Sbjct:   29 NITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKK 157          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   55 LPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +PD + N   +H  + G   + +EGG F L L   EDYP   PK +F    +HPN+   G +CL +L +   W PA+ ++ IL+ IQ LL  PNP DP   +   L+  + AE  R  R+  ++Y
Sbjct:   26 IPDEN-NARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDK--WSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKY 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            W   + G   T +EGGFF   L F  DYP KPPK KF    +HPN+   G VC+SIL++           +  W P  TV+ IL+ +  +L  PN   PA  +   +  ++ AE+K++V Q
Sbjct:   36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQ 156          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UB2E1_HUMAN2.162e-1838.66Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC11_SCHPO3.687e-1838.21Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC20_ARATH1.830e-1741.88Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC7_YEAST2.390e-1732.56Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC7_WHEAT4.077e-1733.83Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC13_ARATH5.324e-1735.77Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2C_SPISO6.954e-1739.34Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC_ASFB76.954e-1733.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2N_DROME9.082e-1736.00Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC7_CAEEL9.082e-1736.36Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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