CX294185

Overview
NameCX294185
Unique NameCX294185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y2277_BORA1 (UPF0061 protein BAV2277 OS=Bordetella avium (strain 197N) GN=BAV2277 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   51 MNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            M+ VNP YVLRN+L + AI AA+ GD  E+ RLL L+ RPYD QPG   YA LPP WA
Sbjct:  424 MDRVNPLYVLRNHLAEQAIRAAQQGDASEIDRLLGLLRRPYDLQPGAEAYAALPPDWA 481          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y2107_BORBR (UPF0061 protein BB2107 OS=Bordetella bronchiseptica GN=BB2107 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   15 SSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            S G + + R A M+ VNP YVLRN+L + AI AA  GD GE+  LLKL+  PY +QPG   YA L P WA
Sbjct:  417 SDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKQQPGYDAYAGLAPDWA 486          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1919_BORPA (UPF0061 protein BPP1919 OS=Bordetella parapertussis GN=BPP1919 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   15 SSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            S G + + R A M+ VNP YVLRN+L + AI AA  GD GE+  LLKL+  PY +QPG   YA L P WA
Sbjct:  417 SDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKQQPGYDAYAGLAPDWA 486          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:   12 LSSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            L  G S   R + M + NP+YVLRNYL Q AID AE GD   V  LL++M+RPYD+QP    +A   P WA
Sbjct:  435 LQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALLEVMQRPYDDQPRRESFAAKRPDWA 505          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:   12 LSSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            L  G S   R + M + NP+YVLRNYL Q AID AE GD   V  LL++M+RPYD+QP    +A   P WA
Sbjct:  435 LQDGASDAVRASRMRAANPRYVLRNYLAQQAIDQAEQGDLSGVHALLEVMQRPYDDQPRRESFAAKRPDWA 505          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:   39 RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            R A MN  NPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP    YA LPP WA
Sbjct:  451 RAAAMNRANPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1842_ERWCT (UPF0061 protein ECA1842 OS=Erwinia carotovora subsp. atroseptica GN=ECA1842 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 3
Query:    3 QELLSSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            Q L+      EER+ LMN+ NPKY+LRNYL Q AI+ AE  D   + RL + + RP+DEQP     A LPP W
Sbjct:  401 QRLMQEDQDDEERRRLMNATNPKYILRNYLAQMAIERAESDDTSALARLHQALCRPFDEQPDSHDLAALPPDW 473          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1090_BORPE (UPF0061 protein BP1090 OS=Bordetella pertussis GN=BP1090 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   15 SSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            S G + + R A M+ VNP YVLRN+L + AI AA  GD GE+  LLKL+  PY  QPG   YA L P WA
Sbjct:  409 SDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKHQPGYDAYAGLAPDWA 478          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y6171_BURCA (UPF0061 protein Bcen_6171 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_6171 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 3
Query:   39 RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            R   MN  NPKYVLRN+L + AI  A+  DF EV RL +++ RP+DEQP    YA LPP WA
Sbjct:  452 RAVAMNRANPKYVLRNHLAEVAIRRAKEKDFSEVERLAQILRRPFDEQPEHEAYAALPPDWA 513          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y5725_HAHCH (UPF0061 protein HCH_05725 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_05725 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   15 SSGISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            SS ++  +R   M  VNP+Y+LRNY+ + AI  A  GD+  V+ LLK+++ P++ QPG  RYA  PP WA
Sbjct:  415 SSDVTLADRTQAMLQVNPEYILRNYMLEEAIREAHQGDYLPVQNLLKIVKNPFNAQPGAERYAEAPPDWA 484          
The following BLAST results are available for this feature:
BLAST of CX294185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
Y2277_BORA15.917e-1360.34UPF0061 protein BAV2277 OS=Bordetella avium (strai... [more]
Y2107_BORBR5.917e-1352.86UPF0061 protein BB2107 OS=Bordetella bronchiseptic... [more]
Y1919_BORPA5.917e-1352.86UPF0061 protein BPP1919 OS=Bordetella parapertussi... [more]
Y1894_XANCB5.917e-1350.70UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]
Y1831_XANC85.917e-1350.70UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]
Y2140_BURTA7.728e-1356.45UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y1842_ERWCT1.009e-1249.32UPF0061 protein ECA1842 OS=Erwinia carotovora subs... [more]
Y1090_BORPE1.009e-1252.86UPF0061 protein BP1090 OS=Bordetella pertussis GN=... [more]
Y6171_BURCA1.722e-1254.84UPF0061 protein Bcen_6171 OS=Burkholderia cenocepa... [more]
Y5725_HAHCH1.722e-1245.71UPF0061 protein HCH_05725 OS=Hahella chejuensis (s... [more]

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Properties
Property NameValue
Genbank descriptionC05013B12SK AbsAOv1 Citrus clementina cDNA clone C05013B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294185 ID=CX294185; Name=CX294185; organism=Citrus clementina; type=EST; length=459bp
TACAAGAGCTGTTGTCTAGTGGCATCTCATATGAGGAAAGGAAGGCATTG
ATGAATTCTGTGAACCCAAAATATGTTCTTAGAAACTACTTGTGCCAGAG
TGCTATAGATGCAGCTGAGCTCGGAGATTTTGGGGAGGTGCGGAGGTTGC
TTAAACTTATGGAACGCCCATATGACGAGCAACCAGGAATGGTAAGGTAT
GCTCGCCTGCCCCCGGCATGGGCTTATCGACCAGGTGTTTGCATGCTTTC
CTGTTCATCGTAATCTGCCATTCTCTGCATTATGTTATACCTATACCAGA
AAGAGGATTGTAACTTCATGTATATAATAGTCGAATCATTATTATTATTA
TTATTTTTGTGGCTGCGGAAAAAAGTAGAAATAATTTGTATGGCATTATT
TCTTTGCAGAATTTTAACAGTTTATGCATTTCGAAATCATTTTATTTATT
ACAATTTTT
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