CX294268

Overview
NameCX294268
Unique NameCX294268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_DECAR (50S ribosomal protein L16 OS=Dechloromonas aromatica (strain RCB) GN=rplP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT++ FG +G+K+   GRL+                RAM+   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EMDGV+ + AR+A  LAA KL + T FV
Sbjct:   16 RNEGLATRGTKVSFGEWGLKAIGRGRLTARQIEAA--------RRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVNEALAREAFALAAAKLPIPTTFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BRASO (50S ribosomal protein L16 OS=Bradyrhizobium sp. (strain ORS278) GN=rplP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    G  L FG++G+K+ +  R++                RA++   +R G++W+RVF DLP++ KP EVRMG GKG+P  W+ARV  G+++FE+DGVS   AR+A TLAA KL + T+FV+
Sbjct:   16 RIHGVASSGATLAFGQFGLKAMEPDRVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDLPVSKKPAEVRMGSGKGSPELWVARVKPGRVMFEIDGVSNQIAREALTLAAAKLPIKTRFVE 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHEPA (50S ribosomal protein L16 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG   +GT++ FG +G+K+   GRL+                RAM+   +R G+IW+RVF D PIT KP EVRMG+GKGN   W+ ++  G++L+EM+GVS   AR+A TLAA KL L T FV
Sbjct:   16 RNRGLA-NGTEVSFGEFGLKAVGRGRLTARQIEAA--------RRAMTRHIKRQGQIWIRVFPDKPITSKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMNGVSEELAREAFTLAAAKLPLKTTFV 131          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHEHH (50S ribosomal protein L16 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG   +GT++ FG +G+K+   GRL+                RAM+   +R G+IW+RVF D PIT KP EVRMG+GKGN   W+ ++  G++L+EM+GVS   AR+A TLAA KL L T FV
Sbjct:   16 RNRGLA-NGTEVSFGEFGLKAVGRGRLTARQIEAA--------RRAMTRHIKRQGQIWIRVFPDKPITSKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMNGVSEELAREAFTLAAAKLPLKTTFV 131          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BARHE (50S ribosomal protein L16 OS=Bartonella henselae GN=rplP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT L FG YG+K+ +  R++                RA++   +R+G++W+R+F DLP+T KPTEVRMG+GKG+   W ARV+ G+I+FE+DG+    AR+A  L A KL + T+F+Q
Sbjct:   16 RIHGVSKGGTDLNFGAYGLKAVEPERITARQIEAA--------RRAITRYMKRSGRVWIRIFPDLPVTSKPTEVRMGKGKGSVDYWAARVAPGRIMFELDGIPEDVAREALRLGAAKLPIKTRFIQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BARBK (50S ribosomal protein L16 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplP1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT L FG YG+K  +  R++                RA++   +R+G++W+RVF DLP+T KPTEVRMG+GKG+   W ARV+ G+I+FE+DGV    AR+A  L A KL + T+F+Q
Sbjct:   16 RIHGASKGGTDLNFGAYGLKVVEPERITARQIEAA--------RRAITRYMKRSGRVWIRVFPDLPVTSKPTEVRMGKGKGSVDYWAARVAPGRIMFELDGVPEDVAREALRLGAAKLPIKTRFIQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_AZOSB (50S ribosomal protein L16 OS=Azoarcus sp. (strain BH72) GN=rplP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 56/125 (44.80%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT++ FG +G+K+   GRL+                RAM+   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EMDGV  + AR+A  LAA KL L T FV
Sbjct:   16 RNTGLATRGTKVSFGDFGLKAIARGRLTARQIESA--------RRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVDEALAREAFRLAAAKLPLETVFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_TOLAT (50S ribosomal protein L16 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rplP PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    G+ + FG YG+K+   G+L+                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKGN   W+A +  G++L+EMDGV    AR+A  LAA KL + T FV
Sbjct:   16 RNRGLANAGSDVSFGTYGLKAVTRGQLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEETAREAFALAAAKLSVKTTFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHILO (50S ribosomal protein L16 OS=Rhizobium loti GN=rplP PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT L FG +G+K+ +  R++                RA++ + +R G++W+R+F DLP+T KPTEVRMG+GKG    W ARV  G+I+FE+DGVS   AR+A  L A KL + T+FVQ
Sbjct:   16 RIHGTAKGGTNLDFGGFGLKALEPNRVTAREIEAA--------RRAITREMKRAGRVWIRIFPDLPVTSKPTEVRMGKGKGAVDYWAARVKPGRIMFEIDGVSEETAREALRLGAAKLSVRTRFVQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_METNO (50S ribosomal protein L16 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplP PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT L FG YG+K+ +  R++                RA++ + +R G++W+R+F D+P+T KPTEVRMG GKG+P  W ARV  G+++FE+DGV+   AR+A  L A KL + T+F+Q
Sbjct:   16 RIHGAAKGGTDLNFGSYGLKALEPERVTARQIEAA--------RRAITREMKRQGRVWIRIFPDVPVTQKPTEVRMGSGKGSPEYWAARVHPGRVMFEIDGVAEDIAREALRLGAAKLPVRTRFIQ 133          
The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_DECAR1.384e-2344.0050S ribosomal protein L16 OS=Dechloromonas aromati... [more]
RL16_BRASO1.384e-2342.8650S ribosomal protein L16 OS=Bradyrhizobium sp. (s... [more]
RL16_SHEPA1.808e-2346.4050S ribosomal protein L16 OS=Shewanella pealeana (... [more]
RL16_SHEHH1.808e-2346.4050S ribosomal protein L16 OS=Shewanella halifaxens... [more]
RL16_BARHE1.808e-2342.0650S ribosomal protein L16 OS=Bartonella henselae G... [more]
RL16_BARBK1.808e-2343.6550S ribosomal protein L16 OS=Bartonella bacillifor... [more]
RL16_AZOSB1.808e-2344.8050S ribosomal protein L16 OS=Azoarcus sp. (strain ... [more]
RL16_TOLAT2.361e-2345.6050S ribosomal protein L16 OS=Tolumonas auensis (st... [more]
RL16_RHILO2.361e-2343.6550S ribosomal protein L16 OS=Rhizobium loti GN=rpl... [more]
RL16_METNO2.361e-2342.0650S ribosomal protein L16 OS=Methylobacterium nodu... [more]

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Properties
Property NameValue
Genbank descriptionC05014D08SK AbsAOv1 Citrus clementina cDNA clone C05014D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bp
GCAGACGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGA
AGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTTCATATCGAGCCAT
TGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCG
GACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTC
CCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAA
TCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCTATTTGAAA
TGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCG
CATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAACATAATTG
GTTAGTGGGGAAAACCCCGGCCGATAAAAATGAGGCGAAGTGCTTGTTCC
TGAACGACAGAAGTCGAAGTGGAAAGACACTAAGGGGGGAGCCAGATGAT
AACAAGGATAAGACAAGAAAAGACCGAAGGAGATAGAGAAAAGATGAATT
CTCTGTCTGAATACGGACAGCCTATTCGTGACTGAAGAGCGA
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