CX294268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_DECAR (50S ribosomal protein L16 OS=Dechloromonas aromatica (strain RCB) GN=rplP PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23 Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+ G GT++ FG +G+K+ GRL+ RAM+ +R G+IW+R+F D PI+ KP EVRMG GKGNP W+A + G++L+EMDGV+ + AR+A LAA KL + T FV Sbjct: 16 RNEGLATRGTKVSFGEWGLKAIGRGRLTARQIEAA--------RRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVNEALAREAFALAAAKLPIPTTFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BRASO (50S ribosomal protein L16 OS=Bradyrhizobium sp. (strain ORS278) GN=rplP PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23 Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G G L FG++G+K+ + R++ RA++ +R G++W+RVF DLP++ KP EVRMG GKG+P W+ARV G+++FE+DGVS AR+A TLAA KL + T+FV+ Sbjct: 16 RIHGVASSGATLAFGQFGLKAMEPDRVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDLPVSKKPAEVRMGSGKGSPELWVARVKPGRVMFEIDGVSNQIAREALTLAAAKLPIKTRFVE 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHEPA (50S ribosomal protein L16 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplP PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23 Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG +GT++ FG +G+K+ GRL+ RAM+ +R G+IW+RVF D PIT KP EVRMG+GKGN W+ ++ G++L+EM+GVS AR+A TLAA KL L T FV Sbjct: 16 RNRGLA-NGTEVSFGEFGLKAVGRGRLTARQIEAA--------RRAMTRHIKRQGQIWIRVFPDKPITSKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMNGVSEELAREAFTLAAAKLPLKTTFV 131
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHEHH (50S ribosomal protein L16 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplP PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23 Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG +GT++ FG +G+K+ GRL+ RAM+ +R G+IW+RVF D PIT KP EVRMG+GKGN W+ ++ G++L+EM+GVS AR+A TLAA KL L T FV Sbjct: 16 RNRGLA-NGTEVSFGEFGLKAVGRGRLTARQIEAA--------RRAMTRHIKRQGQIWIRVFPDKPITSKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMNGVSEELAREAFTLAAAKLPLKTTFV 131
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BARHE (50S ribosomal protein L16 OS=Bartonella henselae GN=rplP PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23 Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT L FG YG+K+ + R++ RA++ +R+G++W+R+F DLP+T KPTEVRMG+GKG+ W ARV+ G+I+FE+DG+ AR+A L A KL + T+F+Q Sbjct: 16 RIHGVSKGGTDLNFGAYGLKAVEPERITARQIEAA--------RRAITRYMKRSGRVWIRIFPDLPVTSKPTEVRMGKGKGSVDYWAARVAPGRIMFELDGIPEDVAREALRLGAAKLPIKTRFIQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BARBK (50S ribosomal protein L16 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplP1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23 Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT L FG YG+K + R++ RA++ +R+G++W+RVF DLP+T KPTEVRMG+GKG+ W ARV+ G+I+FE+DGV AR+A L A KL + T+F+Q Sbjct: 16 RIHGASKGGTDLNFGAYGLKVVEPERITARQIEAA--------RRAITRYMKRSGRVWIRVFPDLPVTSKPTEVRMGKGKGSVDYWAARVAPGRIMFELDGVPEDVAREALRLGAAKLPIKTRFIQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_AZOSB (50S ribosomal protein L16 OS=Azoarcus sp. (strain BH72) GN=rplP PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23 Identity = 56/125 (44.80%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+ G GT++ FG +G+K+ GRL+ RAM+ +R G+IW+R+F D PI+ KP EVRMG GKGNP W+A + G++L+EMDGV + AR+A LAA KL L T FV Sbjct: 16 RNTGLATRGTKVSFGDFGLKAIARGRLTARQIESA--------RRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVDEALAREAFRLAAAKLPLETVFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_TOLAT (50S ribosomal protein L16 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rplP PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23 Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG G+ + FG YG+K+ G+L+ RAM+ +R GKIW+RVF D PIT KP EVRMG+GKGN W+A + G++L+EMDGV AR+A LAA KL + T FV Sbjct: 16 RNRGLANAGSDVSFGTYGLKAVTRGQLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEETAREAFALAAAKLSVKTTFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHILO (50S ribosomal protein L16 OS=Rhizobium loti GN=rplP PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23 Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT L FG +G+K+ + R++ RA++ + +R G++W+R+F DLP+T KPTEVRMG+GKG W ARV G+I+FE+DGVS AR+A L A KL + T+FVQ Sbjct: 16 RIHGTAKGGTNLDFGGFGLKALEPNRVTAREIEAA--------RRAITREMKRAGRVWIRIFPDLPVTSKPTEVRMGKGKGAVDYWAARVKPGRIMFEIDGVSEETAREALRLGAAKLSVRTRFVQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_METNO (50S ribosomal protein L16 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplP PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23 Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT L FG YG+K+ + R++ RA++ + +R G++W+R+F D+P+T KPTEVRMG GKG+P W ARV G+++FE+DGV+ AR+A L A KL + T+F+Q Sbjct: 16 RIHGAAKGGTDLNFGSYGLKALEPERVTARQIEAA--------RRAITREMKRQGRVWIRIFPDVPVTQKPTEVRMGSGKGSPEYWAARVHPGRVMFEIDGVAEDIAREALRLGAAKLPVRTRFIQ 133 The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bpback to top |