CX294268

Overview
NameCX294268
Unique NameCX294268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHOP5 (50S ribosomal protein L16 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 52/125 (41.60%), Postives = 78/125 (62.40%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R  G    G  L FG++G+K+    R++                RA++   +R G++W+R+F D+P++ KP EVRMG GKG+P  W+ARV  G+++FE+DGV+L  AR+A TLAA KL + T+FV
Sbjct:   16 RIHGVASSGATLSFGQFGLKAMAPERITARQIEAA--------RRALTRHMKRAGRVWIRIFPDVPVSKKPAEVRMGSGKGSPELWVARVKPGRVIFEIDGVNLQIAREALTLAAAKLPIKTRFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BORPE (50S ribosomal protein L16 OS=Bordetella pertussis GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT + FG +G+K+   GRL+                RA++   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EM+GVS   AR+A  LAA KL +ST FV
Sbjct:   16 RNTGLASRGTHVSFGEFGLKATGRGRLTARQIEAA--------RRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BORPD (50S ribosomal protein L16 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT + FG +G+K+   GRL+                RA++   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EM+GVS   AR+A  LAA KL +ST FV
Sbjct:   16 RNTGLATRGTHVSFGEFGLKATGRGRLTARQIEAA--------RRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BORPA (50S ribosomal protein L16 OS=Bordetella parapertussis GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT + FG +G+K+   GRL+                RA++   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EM+GVS   AR+A  LAA KL +ST FV
Sbjct:   16 RNTGLASRGTHVSFGEFGLKATGRGRLTARQIEAA--------RRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BORBR (50S ribosomal protein L16 OS=Bordetella bronchiseptica GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    GT + FG +G+K+   GRL+                RA++   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EM+GVS   AR+A  LAA KL +ST FV
Sbjct:   16 RNTGLASRGTHVSFGEFGLKATGRGRLTARQIEAA--------RRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BORA1 (50S ribosomal protein L16 OS=Bordetella avium (strain 197N) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    G Q+ FG +G+K+   GRL+                RA++   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EM+GVS   AR+A  LAA KL +ST FV
Sbjct:   16 RNTGLATRGAQVSFGEFGLKATGRGRLTARQIEAA--------RRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHEAM (50S ribosomal protein L16 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    GT++ FG +G+K+   GRL+                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKGN   W+ ++  G++L+EMDGVS   AR+A  LAA KL + T FV
Sbjct:   16 RNRGLAA-GTEVSFGTFGLKAVGRGRLTARQIESA--------RRAMTRHVKRQGKIWIRVFPDKPITAKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMDGVSEELAREAFGLAAAKLPIKTTFV 131
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_MARMS (50S ribosomal protein L16 OS=Marinomonas sp. (strain MWYL1) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    G Q+ FG +G+KS + GRL+                RAM+   +R G+IW+RVF D PIT KP EVR G+GKG+   W+A++  G++L+E++GVS   AR+A  LAA KL LST FV
Sbjct:   16 RNRGLALRGNQVSFGEFGLKSTERGRLTARQIEAA--------RRAMTRHIKRGGRIWIRVFPDKPITQKPLEVRQGKGKGSVEYWVAQIQPGKMLYEVEGVSEQLAREAFALAAAKLPLSTTFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_AZOSE (50S ribosomal protein L16 OS=Azoarcus sp. (strain EbN1) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+ G    G ++ FG +G+K+   GRL+                RAM+   +R G+IW+R+F D PI+ KP EVRMG GKGNP  W+A +  G++L+EMDGV  + AR+A  LAA KL L T FV
Sbjct:   16 RNTGIATRGAKVSFGEFGLKAIGRGRLTARQIESA--------RRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVDETLAREAFRLAAAKLPLETVFV 132
[Close]
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SHESH (50S ribosomal protein L16 OS=Shewanella sediminis (strain HAW-EB3) GN=rplP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.871e-23
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 3 
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG   +GT++ FG +G+K+   GRL+                RAM+   +R G+IW+RVF D PIT KP EVRMG+GKGN   W+ ++  G++L+EMDGV+   AR+A  LAA KL L T FV
Sbjct:   16 RNRGLA-NGTEVSFGDFGLKAVGRGRLTARQIEAA--------RRAMTRHIKRQGQIWIRVFPDKPITSKPLEVRMGKGKGNVEYWVCQIQPGKVLYEMDGVTEELAREAFALAAAKLPLKTTFV 131
The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_RHOP54.028e-2341.6050S ribosomal protein L16 OS=Rhodopseudomonas palu... [more]
RL16_BORPE4.028e-2344.0050S ribosomal protein L16 OS=Bordetella pertussis ... [more]
RL16_BORPD4.028e-2344.0050S ribosomal protein L16 OS=Bordetella petrii (st... [more]
RL16_BORPA4.028e-2344.0050S ribosomal protein L16 OS=Bordetella parapertus... [more]
RL16_BORBR4.028e-2344.0050S ribosomal protein L16 OS=Bordetella bronchisep... [more]
RL16_BORA14.028e-2344.0050S ribosomal protein L16 OS=Bordetella avium (str... [more]
RL16_SHEAM5.261e-2346.4050S ribosomal protein L16 OS=Shewanella amazonensi... [more]
RL16_MARMS5.261e-2345.6050S ribosomal protein L16 OS=Marinomonas sp. (stra... [more]
RL16_AZOSE5.261e-2344.0050S ribosomal protein L16 OS=Azoarcus sp. (strain ... [more]
RL16_SHESH6.871e-2345.6050S ribosomal protein L16 OS=Shewanella sediminis ... [more]

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Properties
Property NameValue
Genbank descriptionC05014D08SK AbsAOv1 Citrus clementina cDNA clone C05014D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bp
GCAGACGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGA
AGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTTCATATCGAGCCAT
TGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCG
GACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTC
CCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAA
TCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCTATTTGAAA
TGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCG
CATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAACATAATTG
GTTAGTGGGGAAAACCCCGGCCGATAAAAATGAGGCGAAGTGCTTGTTCC
TGAACGACAGAAGTCGAAGTGGAAAGACACTAAGGGGGGAGCCAGATGAT
AACAAGGATAAGACAAGAAAAGACCGAAGGAGATAGAGAAAAGATGAATT
CTCTGTCTGAATACGGACAGCCTATTCGTGACTGAAGAGCGA
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