CX294268

Overview
NameCX294268
Unique NameCX294268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SYNAS (50S ribosomal protein L16 OS=Syntrophus aciditrophicus (strain SB) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R  G    G+++ FG YG+++ + G ++                 A++   RR GKIW+R+F    IT KP E RMG+GKG P  W+A V  G +L+EM GVS   AR+A  LA+HKL + T+F+
Sbjct:   16 RRTGTATRGSKISFGEYGLQAEECGWITARQIEAARI--------AITRHVRRGGKIWIRIFPHKSITKKPAETRMGKGKGAPEEWVAVVKPGTVLYEMQGVSKEVAREAFRLASHKLPIGTRFL 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_LACS1 (50S ribosomal protein L16 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            + RG    G ++ FG+YG+K+  +  ++                 AM+   +R GK+W+++F     T K   VRMG GKG P GW+A V  G++LFE+DGVS   AR+A  LA+HKL + TKFVQ
Sbjct:   16 KMRGEAKGGKEVTFGKYGLKALDSHWITNRQIEAARI--------AMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVLFEIDGVSEEVAREALRLASHKLPVKTKFVQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_KOCRD (50S ribosomal protein L16 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R RG    GTQ+ FG +GI++     ++                 AM+   +R GK+W+ ++ D P+T KP E RMG GKG+P  WIA V  G+++FE+ GVS   AR+A  LA HKL +  + V+
Sbjct:   16 RRRGQAKGGTQVTFGEWGIQAMSPAYVTNRQIEAARI--------AMTRHIKRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWIANVKPGRVMFEISGVSEDVAREALRLAIHKLPMKARIVR 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_HAMD5 (50S ribosomal protein L16 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG   +GT + FG +G+K+    RL+                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKGN   W+  +  G++LFEM  VS   AR+A  LAA KL + T FV
Sbjct:   16 RNRGLA-NGTDVIFGHFGLKASGRCRLTARQIESA--------RRAMTRCIKRQGKIWIRVFPDKPITQKPLEVRMGKGKGNVEYWVDLIQPGKVLFEMGDVSEEIAREAFKLAAAKLPVGTTFV 131          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_EXISA (50S ribosomal protein L16 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            + RG    GT + FG +G+++ +A  ++                 AM+   +R GK+W+++F   P T KP EVRMG GKG P GW+A V  G+++FE+ GVS   AR+A  LA+HKL +  KFV+
Sbjct:   16 KMRGNAKRGTTVHFGEFGLQALEASWITNRQIESARI--------AMTRYMKRGGKVWIKIFPHKPYTKKPLEVRMGSGKGAPEGWVAVVKPGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVK 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_ZYGCR (50S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R +G    G ++ FGR+G+++ +   ++                RA++   RR GK+W+R+F D PIT +P E RMG GKG+P  W+A V  G+IL+EM GVS + AR A  +AA K+ + T+F++
Sbjct:   16 RLKGISTRGNRICFGRFGLQALEPSWITSRQIEAG--------RRAITRYARRGGKLWIRIFPDKPITMRPAETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETIARAAMRIAAFKMPIKTQFIK 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_SOLTU (50S ribosomal protein L16, chloroplastic OS=Solanum tuberosum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R +G    G  + FG+Y +++ +   ++                RAM+   RR GKIWVR+F D P+T +P E RMG GKG+P  W+A V  G+IL+EM GV+ + AR+A +LAA K+   T+F+
Sbjct:   16 RMKGISSRGNHISFGKYALQALEPAWITSRQIEAG--------RRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPKRTQFI 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R +G    G ++ FGRY +++ +   ++                RAM+   RR GKIWVR+F D P+T +P+E RMG GKG+P  W+A V  G++++EM GV+ + AR+A ++AA K+ + T+F+
Sbjct:   16 RMKGISSRGNRICFGRYALQALEPAWITSRQIEAG--------RRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAASKMPIRTQFI 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_PHAVU (50S ribosomal protein L16, chloroplastic OS=Phaseolus vulgaris GN=rpl16 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R +G    G ++ FGRY +++ +   ++                RAMS   RR G+IWVR+F D P+T +PTE RMG GKG P  W+A V  G+IL+EM GV  + AR+A ++A+ K+ + T+F+
Sbjct:   16 RMKGISSRGNRICFGRYALQALEPAWITSRQIEAG--------RRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFI 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_CYAP7 (50S ribosomal protein L16 OS=Cyanothece sp. (strain PCC 7424) GN=rplP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R +G    G  + FG +G+++ +   ++                RA++   RR GKIW+R+F D PIT +P E RMG GKG+P  W+A V  G+I+FE+ GVS   AR+A  LAA KL + TKFV
Sbjct:   16 RMKGLASRGNTINFGDFGLQATEPCWITSRQIEAA--------RRAITRYVRRGGKIWIRIFPDKPITMRPAETRMGSGKGSPEFWVAVVKPGRIMFEIAGVSEEIAREAMRLAAQKLPIKTKFV 132          
The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_SYNAS3.529e-1939.2050S ribosomal protein L16 OS=Syntrophus aciditroph... [more]
RL16_LACS13.529e-1939.6850S ribosomal protein L16 OS=Lactobacillus salivar... [more]
RL16_KOCRD3.529e-1938.1050S ribosomal protein L16 OS=Kocuria rhizophila (s... [more]
RL16_HAMD53.529e-1944.8050S ribosomal protein L16 OS=Hamiltonella defensa ... [more]
RL16_EXISA3.529e-1938.8950S ribosomal protein L16 OS=Exiguobacterium sp. (... [more]
RK16_ZYGCR3.529e-1938.1050S ribosomal protein L16, chloroplastic OS=Zygnem... [more]
RK16_SOLTU3.529e-1939.2050S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_POPTR3.529e-1937.6050S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_PHAVU3.529e-1939.2050S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RL16_CYAP74.609e-1940.8050S ribosomal protein L16 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05014D08SK AbsAOv1 Citrus clementina cDNA clone C05014D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bp
GCAGACGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGA
AGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTTCATATCGAGCCAT
TGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCG
GACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTC
CCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAA
TCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCTATTTGAAA
TGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCG
CATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAACATAATTG
GTTAGTGGGGAAAACCCCGGCCGATAAAAATGAGGCGAAGTGCTTGTTCC
TGAACGACAGAAGTCGAAGTGGAAAGACACTAAGGGGGGAGCCAGATGAT
AACAAGGATAAGACAAGAAAAGACCGAAGGAGATAGAGAAAAGATGAATT
CTCTGTCTGAATACGGACAGCCTATTCGTGACTGAAGAGCGA
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