CX294268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SYNAS (50S ribosomal protein L16 OS=Syntrophus aciditrophicus (strain SB) GN=rplP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R G G+++ FG YG+++ + G ++ A++ RR GKIW+R+F IT KP E RMG+GKG P W+A V G +L+EM GVS AR+A LA+HKL + T+F+ Sbjct: 16 RRTGTATRGSKISFGEYGLQAEECGWITARQIEAARI--------AITRHVRRGGKIWIRIFPHKSITKKPAETRMGKGKGAPEEWVAVVKPGTVLYEMQGVSKEVAREAFRLASHKLPIGTRFL 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_LACS1 (50S ribosomal protein L16 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 + RG G ++ FG+YG+K+ + ++ AM+ +R GK+W+++F T K VRMG GKG P GW+A V G++LFE+DGVS AR+A LA+HKL + TKFVQ Sbjct: 16 KMRGEAKGGKEVTFGKYGLKALDSHWITNRQIEAARI--------AMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVLFEIDGVSEEVAREALRLASHKLPVKTKFVQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_KOCRD (50S ribosomal protein L16 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R RG GTQ+ FG +GI++ ++ AM+ +R GK+W+ ++ D P+T KP E RMG GKG+P WIA V G+++FE+ GVS AR+A LA HKL + + V+ Sbjct: 16 RRRGQAKGGTQVTFGEWGIQAMSPAYVTNRQIEAARI--------AMTRHIKRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWIANVKPGRVMFEISGVSEDVAREALRLAIHKLPMKARIVR 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_HAMD5 (50S ribosomal protein L16 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG +GT + FG +G+K+ RL+ RAM+ +R GKIW+RVF D PIT KP EVRMG+GKGN W+ + G++LFEM VS AR+A LAA KL + T FV Sbjct: 16 RNRGLA-NGTDVIFGHFGLKASGRCRLTARQIESA--------RRAMTRCIKRQGKIWIRVFPDKPITQKPLEVRMGKGKGNVEYWVDLIQPGKVLFEMGDVSEEIAREAFKLAAAKLPVGTTFV 131
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_EXISA (50S ribosomal protein L16 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 + RG GT + FG +G+++ +A ++ AM+ +R GK+W+++F P T KP EVRMG GKG P GW+A V G+++FE+ GVS AR+A LA+HKL + KFV+ Sbjct: 16 KMRGNAKRGTTVHFGEFGLQALEASWITNRQIESARI--------AMTRYMKRGGKVWIKIFPHKPYTKKPLEVRMGSGKGAPEGWVAVVKPGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVK 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_ZYGCR (50S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum GN=rpl16 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R +G G ++ FGR+G+++ + ++ RA++ RR GK+W+R+F D PIT +P E RMG GKG+P W+A V G+IL+EM GVS + AR A +AA K+ + T+F++ Sbjct: 16 RLKGISTRGNRICFGRFGLQALEPSWITSRQIEAG--------RRAITRYARRGGKLWIRIFPDKPITMRPAETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETIARAAMRIAAFKMPIKTQFIK 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_SOLTU (50S ribosomal protein L16, chloroplastic OS=Solanum tuberosum GN=rpl16 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R +G G + FG+Y +++ + ++ RAM+ RR GKIWVR+F D P+T +P E RMG GKG+P W+A V G+IL+EM GV+ + AR+A +LAA K+ T+F+ Sbjct: 16 RMKGISSRGNHISFGKYALQALEPAWITSRQIEAG--------RRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPKRTQFI 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R +G G ++ FGRY +++ + ++ RAM+ RR GKIWVR+F D P+T +P+E RMG GKG+P W+A V G++++EM GV+ + AR+A ++AA K+ + T+F+ Sbjct: 16 RMKGISSRGNRICFGRYALQALEPAWITSRQIEAG--------RRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAASKMPIRTQFI 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RK16_PHAVU (50S ribosomal protein L16, chloroplastic OS=Phaseolus vulgaris GN=rpl16 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19 Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R +G G ++ FGRY +++ + ++ RAMS RR G+IWVR+F D P+T +PTE RMG GKG P W+A V G+IL+EM GV + AR+A ++A+ K+ + T+F+ Sbjct: 16 RMKGISSRGNRICFGRYALQALEPAWITSRQIEAG--------RRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFI 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_CYAP7 (50S ribosomal protein L16 OS=Cyanothece sp. (strain PCC 7424) GN=rplP PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19 Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R +G G + FG +G+++ + ++ RA++ RR GKIW+R+F D PIT +P E RMG GKG+P W+A V G+I+FE+ GVS AR+A LAA KL + TKFV Sbjct: 16 RMKGLASRGNTINFGDFGLQATEPCWITSRQIEAA--------RRAITRYVRRGGKIWIRIFPDKPITMRPAETRMGSGKGSPEFWVAVVKPGRIMFEIAGVSEEIAREAMRLAAQKLPIKTKFV 132 The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bpback to top |