CX294268

Overview
NameCX294268
Unique NameCX294268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_PROMH (50S ribosomal protein L16 OS=Proteus mirabilis (strain HI4320) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   30 GTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            GT + FG YG+K+   GRL+                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKGN   W+A +  G++L+EMDGV    AR+A  LAA KL + T FV
Sbjct:   23 GTDVSFGTYGLKAVGRGRLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEEVAREAFQLAAAKLPIKTTFV 131          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_NITMU (50S ribosomal protein L16 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R++G    G ++ FG YG+K+   GRL+                RAM+   +R G+IW+R+F D PI+ KP EVRMG GKGNP  ++A +  G++L+EMDGV    ARQA  LAA KL + T FV
Sbjct:   16 RNKGIATRGAKVSFGEYGLKAVGRGRLTARQIEAA--------RRAMTRHIKRGGRIWIRIFPDKPISHKPAEVRMGNGKGNPEYFVAEIQPGKVLYEMDGVDEVLARQAFRLAAAKLPILTTFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_NITHX (50S ribosomal protein L16 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R  G    G  L FG++G+K+    R+S                RA++   +R G++W+RVF D+P++ KP EVRMG GKG P  W+ RV  G++LFE+DGV    A++A TLAA KL + T+FV
Sbjct:   16 RIHGTASSGATLAFGQFGLKAMAPERISARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVSKKPAEVRMGSGKGAPELWVVRVKPGRVLFEIDGVGAQTAKEALTLAAAKLPIKTRFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_COLP3 (50S ribosomal protein L16 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    G+ + FG +G+KS + GR++                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKG+   W+ ++  G++L+EM+GVS   AR+A  LAA KL   T FV
Sbjct:   16 RNRGLAHVGSSVSFGTFGLKSMERGRMTARQIEAA--------RRAMTRHVKRQGKIWIRVFPDKPITKKPLEVRMGKGKGSVEYWVCQILPGRVLYEMEGVSEEIAREAFALAASKLPFKTTFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_CHRSD (50S ribosomal protein L16 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R+RG    G+++ FG YG+K+   GR++                RA++   +R GKIW+RVF D PIT KP EVRMG+GKG+   W+A++  G++L+E++GVS   AR+A  LAA K  +ST FV+
Sbjct:   16 RNRGLAHRGSKVSFGEYGLKATGRGRITARQIEAG--------RRAITRHVKRGGKIWIRVFPDKPITEKPLEVRMGKGKGSVEYWVAQIQPGKVLYEIEGVSEELAREAFDLAAQKFPVSTTFVK 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_ACIF5 (50S ribosomal protein L16 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    G+++ FG +G+K+   GR++                RA+S   +R G+IW+R+F D PI+ KP EVRMG+GKGNP  W+A +  G++L+EM+GV+   AR+A  L A KL + T FV
Sbjct:   16 RNRGVATRGSKVSFGEFGLKAVGRGRITARQLEAA--------RRAISRHVKRGGRIWIRIFPDKPISKKPAEVRMGKGKGNPEYWVALIQPGKVLYEMEGVTEEVAREAFALGAAKLPVQTAFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_ACIF2 (50S ribosomal protein L16 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplP PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    G+++ FG +G+K+   GR++                RA+S   +R G+IW+R+F D PI+ KP EVRMG+GKGNP  W+A +  G++L+EM+GV+   AR+A  L A KL + T FV
Sbjct:   16 RNRGVATRGSKVSFGEFGLKAVGRGRITARQLEAA--------RRAISRHVKRGGRIWIRIFPDKPISKKPAEVRMGKGKGNPEYWVALIQPGKVLYEMEGVTEEVAREAFALGAAKLPVQTAFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SERP5 (50S ribosomal protein L16 OS=Serratia proteamaculans (strain 568) GN=rplP PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R+RG    GT + FG +G+K+   GRL+                RAM+   +R GKIW+RVF D PIT KP EVRMG+GKGN   W+A +  G++L+EMDGV    AR+A  LAA KL + T FV
Sbjct:   16 RNRGLA-QGTDVSFGTFGLKAVGRGRLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEEVAREAFKLAAAKLPIKTTFV 131          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHOPS (50S ribosomal protein L16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplP PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R  G    G  L FG++G+K+ +  R++                RA++   +R G++W+R+F D+P++ KP EVRMG GKG P  W+ARV  G+++FE+DGV+   AR+A TLAA KL + T+FV
Sbjct:   16 RIHGVASSGATLAFGQFGLKAMEPERVTARQIEAA--------RRALTRHMKRAGRVWIRIFPDVPVSKKPAEVRMGSGKGAPELWVARVKPGRVMFEIDGVNQQIAREALTLAAAKLPIKTRFV 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHOP2 (50S ribosomal protein L16 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplP PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380
            R  G    G  L FG++G+K+ +  R++                RA++   +R G++W+R+F D+P++ KP EVRMG GKG P  W+ARV  G+++FE+DGV+   A++A TLAA KL + T+FV
Sbjct:   16 RIHGVASSGATLAFGQFGLKAMEPERVTARQIEAA--------RRALTRHMKRAGRVWIRIFPDVPVSKKPAEVRMGSGKGAPELWVARVKPGRVMFEIDGVNQQTAKEALTLAAAKLPIKTRFV 132          
The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_PROMH2.611e-2247.8650S ribosomal protein L16 OS=Proteus mirabilis (st... [more]
RL16_NITMU2.611e-2244.0050S ribosomal protein L16 OS=Nitrosospira multifor... [more]
RL16_NITHX2.611e-2241.6050S ribosomal protein L16 OS=Nitrobacter hamburgen... [more]
RL16_COLP32.611e-2244.0050S ribosomal protein L16 OS=Colwellia psychreryth... [more]
RL16_CHRSD2.611e-2242.8650S ribosomal protein L16 OS=Chromohalobacter sale... [more]
RL16_ACIF52.611e-2241.6050S ribosomal protein L16 OS=Acidithiobacillus fer... [more]
RL16_ACIF22.611e-2241.6050S ribosomal protein L16 OS=Acidithiobacillus fer... [more]
RL16_SERP53.410e-2246.4050S ribosomal protein L16 OS=Serratia proteamacula... [more]
RL16_RHOPS3.410e-2240.8050S ribosomal protein L16 OS=Rhodopseudomonas palu... [more]
RL16_RHOP23.410e-2240.0050S ribosomal protein L16 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionC05014D08SK AbsAOv1 Citrus clementina cDNA clone C05014D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bp
GCAGACGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGA
AGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTTCATATCGAGCCAT
TGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCG
GACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTC
CCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAA
TCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCTATTTGAAA
TGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCG
CATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAACATAATTG
GTTAGTGGGGAAAACCCCGGCCGATAAAAATGAGGCGAAGTGCTTGTTCC
TGAACGACAGAAGTCGAAGTGGAAAGACACTAAGGGGGGAGCCAGATGAT
AACAAGGATAAGACAAGAAAAGACCGAAGGAGATAGAGAAAAGATGAATT
CTCTGTCTGAATACGGACAGCCTATTCGTGACTGAAGAGCGA
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