CX294268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_PROMH (50S ribosomal protein L16 OS=Proteus mirabilis (strain HI4320) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 30 GTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 GT + FG YG+K+ GRL+ RAM+ +R GKIW+RVF D PIT KP EVRMG+GKGN W+A + G++L+EMDGV AR+A LAA KL + T FV Sbjct: 23 GTDVSFGTYGLKAVGRGRLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEEVAREAFQLAAAKLPIKTTFV 131
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_NITMU (50S ribosomal protein L16 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R++G G ++ FG YG+K+ GRL+ RAM+ +R G+IW+R+F D PI+ KP EVRMG GKGNP ++A + G++L+EMDGV ARQA LAA KL + T FV Sbjct: 16 RNKGIATRGAKVSFGEYGLKAVGRGRLTARQIEAA--------RRAMTRHIKRGGRIWIRIFPDKPISHKPAEVRMGNGKGNPEYFVAEIQPGKVLYEMDGVDEVLARQAFRLAAAKLPILTTFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_NITHX (50S ribosomal protein L16 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R G G L FG++G+K+ R+S RA++ +R G++W+RVF D+P++ KP EVRMG GKG P W+ RV G++LFE+DGV A++A TLAA KL + T+FV Sbjct: 16 RIHGTASSGATLAFGQFGLKAMAPERISARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVSKKPAEVRMGSGKGAPELWVVRVKPGRVLFEIDGVGAQTAKEALTLAAAKLPIKTRFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_COLP3 (50S ribosomal protein L16 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG G+ + FG +G+KS + GR++ RAM+ +R GKIW+RVF D PIT KP EVRMG+GKG+ W+ ++ G++L+EM+GVS AR+A LAA KL T FV Sbjct: 16 RNRGLAHVGSSVSFGTFGLKSMERGRMTARQIEAA--------RRAMTRHVKRQGKIWIRVFPDKPITKKPLEVRMGKGKGSVEYWVCQILPGRVLYEMEGVSEEIAREAFALAASKLPFKTTFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_CHRSD (50S ribosomal protein L16 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R+RG G+++ FG YG+K+ GR++ RA++ +R GKIW+RVF D PIT KP EVRMG+GKG+ W+A++ G++L+E++GVS AR+A LAA K +ST FV+ Sbjct: 16 RNRGLAHRGSKVSFGEYGLKATGRGRITARQIEAG--------RRAITRHVKRGGKIWIRVFPDKPITEKPLEVRMGKGKGSVEYWVAQIQPGKVLYEIEGVSEELAREAFDLAAQKFPVSTTFVK 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_ACIF5 (50S ribosomal protein L16 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG G+++ FG +G+K+ GR++ RA+S +R G+IW+R+F D PI+ KP EVRMG+GKGNP W+A + G++L+EM+GV+ AR+A L A KL + T FV Sbjct: 16 RNRGVATRGSKVSFGEFGLKAVGRGRITARQLEAA--------RRAISRHVKRGGRIWIRIFPDKPISKKPAEVRMGKGKGNPEYWVALIQPGKVLYEMEGVTEEVAREAFALGAAKLPVQTAFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_ACIF2 (50S ribosomal protein L16 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplP PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22 Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG G+++ FG +G+K+ GR++ RA+S +R G+IW+R+F D PI+ KP EVRMG+GKGNP W+A + G++L+EM+GV+ AR+A L A KL + T FV Sbjct: 16 RNRGVATRGSKVSFGEFGLKAVGRGRITARQLEAA--------RRAISRHVKRGGRIWIRIFPDKPISKKPAEVRMGKGKGNPEYWVALIQPGKVLYEMEGVTEEVAREAFALGAAKLPVQTAFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_SERP5 (50S ribosomal protein L16 OS=Serratia proteamaculans (strain 568) GN=rplP PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22 Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R+RG GT + FG +G+K+ GRL+ RAM+ +R GKIW+RVF D PIT KP EVRMG+GKGN W+A + G++L+EMDGV AR+A LAA KL + T FV Sbjct: 16 RNRGLA-QGTDVSFGTFGLKAVGRGRLTARQIEAA--------RRAMTRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEEVAREAFKLAAAKLPIKTTFV 131
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHOPS (50S ribosomal protein L16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplP PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22 Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R G G L FG++G+K+ + R++ RA++ +R G++W+R+F D+P++ KP EVRMG GKG P W+ARV G+++FE+DGV+ AR+A TLAA KL + T+FV Sbjct: 16 RIHGVASSGATLAFGQFGLKAMEPERVTARQIEAA--------RRALTRHMKRAGRVWIRIFPDVPVSKKPAEVRMGSGKGAPELWVARVKPGRVMFEIDGVNQQIAREALTLAAAKLPIKTRFV 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_RHOP2 (50S ribosomal protein L16 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplP PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22 Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFV 380 R G G L FG++G+K+ + R++ RA++ +R G++W+R+F D+P++ KP EVRMG GKG P W+ARV G+++FE+DGV+ A++A TLAA KL + T+FV Sbjct: 16 RIHGVASSGATLAFGQFGLKAMEPERVTARQIEAA--------RRALTRHMKRAGRVWIRIFPDVPVSKKPAEVRMGSGKGAPELWVARVKPGRVMFEIDGVNQQTAKEALTLAAAKLPIKTRFV 132 The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bpback to top |