CX294350

Overview
NameCX294350
Unique NameCX294350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3655 contig Ccv1_Contig3655:48..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  173 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYK-FMSKYVKVG 475
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELEAL +   K + +KY  VG
Sbjct:   42 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVG 141          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 42/112 (37.50%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  149 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EE      P ++  + + E+L+QYDGS + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG
Sbjct:   88 EESPATSLPRMKKRDFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVG 198          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  161 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY  VG
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVG 168          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  161 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY  VG
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVG 168          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 41/112 (36.61%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  149 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVG 192          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 41/112 (36.61%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  149 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVG 192          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  170 PPPV---QLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            PPP+   +  + T E+L+ YDG    + +LMA+  +++DV+++  FYGP GPY +FAG+DASR LA    ++   +D   D+S L   + E L+DWE +F  KY  VG
Sbjct:   60 PPPLPKMKRRDFTLEQLRPYDGVRDPR-ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVG 166          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  170 PPPVQLGE---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            P   +L E   +++EEL  YDG      + +AI  Q++DV +    YGPGG Y+ FAGKDASRA     F EK L  D++ L P ++  L +W   +   Y+ +G
Sbjct:   36 PQQCELSEGRLMSKEELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIG 140          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  194 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            +T+E+L  Y+G  + K L +AI  Q++DV + R  YGPGG Y  F GKDASRA     F E  L+ D+S     ++ AL DW   +   Y  VG
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVG 147          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  128 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEK-------DLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            ++  + +    EP  P  +  + T  ELK+Y+GS +   + +AIK  +Y+V+    FYGP GPY+ FAG DASR LAK SF+++       +   D S L   E +AL DW+  F  KY  VG
Sbjct:   23 RKNEKSFIASEEPKQP--EWRDYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVG 142          
The following BLAST results are available for this feature:
BLAST of CX294350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NENF_HUMAN4.576e-1745.10Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
PGRC2_HUMAN7.805e-1737.50Membrane-associated progesterone receptor componen... [more]
PGRC1_PONAB1.019e-1643.12Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN1.019e-1643.12Membrane-associated progesterone receptor componen... [more]
PGRC2_RAT1.331e-1636.61Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE1.331e-1636.61Membrane-associated progesterone receptor componen... [more]
PGRC1_CHICK5.059e-1640.74Membrane-associated progesterone receptor componen... [more]
CB5D2_XENTR1.923e-1538.10Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]
CB5D2_DANRE4.283e-1541.49Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
DAP1_SCHPO9.541e-1538.21Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC05015F01SK FlavSen1 Citrus clementina cDNA clone C05015F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294350 ID=CX294350; Name=CX294350; organism=Citrus clementina; type=EST; length=479bp
ACTCTAAAAGAGGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTT
TTTTACAGTTGTTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAA
TGTTTGGTGTCGTCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGA
GGAACAGATGGAGCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATTACCG
AGGAGGAGCTCAAACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTC
ATGGCCATCAAGAGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTA
TGGACCTGGTGGGCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGG
CCCTTGCCAAGATGTCTTTTGAGGAAAAAGATTTAACTGGTGATATCTCT
GGTCTTGGTCCATTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTT
CATGAGCAAGTATGTTAAGGTTGGATCTA
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