CX294355

Overview
NameCX294355
Unique NameCX294355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETE--RNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG 379
            SFVRQLNTYGFRK+DPD+WEFA+E F+RGQ  LL  I R+K     +        E E  R   EA ++RL++E                  E  +Q++ +RLR  E+R  QM+A LA L  +PG
Sbjct:   75 SFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGTIEA-VQRLREE--------------QRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPG 184          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTET----ERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKR 427
            SF+RQLN YGFRK+D D+WEFAN+ F+RGQ+ LLKN+ RRK V S S QS    T T    E++    +++ LK +                  +  +  + +R++ +E  Q +M++ L  ++K P     L Q  E ++ ++
Sbjct:   71 SFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQS-SEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLLVQLLQPKEKNTWRK 212          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPL----TETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG-----FSSALNQQAEVHSKKRRLLRPTTIEYFDDVKSASLSV 490
            SFVRQLNTYGFRKI+ ++WEF NE F+ GQR LLK+I RR      S+ SP  L    ++ E ++   ++ +L++E                    +VQ++ +R+   E +Q  M++ L   ++ P      F    +++      +  L++   +E+  ++++ +L +
Sbjct:   79 SFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRT-----SSSSPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVENPSLLQQIFEQKRDREEAAMIDQAGLIKMEEVEHLSELEALALEM 242          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 169
            SFVRQLNTYGFRK+ P++WEFANE F +G++ LL  IHRRK   S ST SP+P
Sbjct:   76 SFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRK-TSSASTASPSP 127          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRK 133
            SFVRQLNTYGFRKI PD+WEFANE F RG++HLL  IHRRK
Sbjct:   85 SFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRK 125          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRR 130
            SFVRQLNTYGFRK+DPD+WEFA+  F+RGQ HLL+NI RR
Sbjct:   62 SFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRR 101          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 169
            SFVRQLNTYGFRKI PD+WEFAN+ F RG++ LL +IHRRK V + +   P P
Sbjct:   89 SFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVAAAAAAPPPP 141          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 169
            SFVRQLNTYGFRKI  D+WEFANE F +G +HLL  IHRRK       Q P P
Sbjct:   87 SFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQPPPP 139          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 376
            SFVRQLNTYGFRK+DPD+WEFA+  F+RGQ HLL+ I RR      + +             EA    + +E++              E E  V ++  R++  E R  QM+A L  ++  P
Sbjct:   65 SFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKRKEE--AGGCGGGGEAAAGDVDEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDP 184          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHS 145
            SFVRQLNTYGFRKI PD+WEFANE F RGQ+ LL  I RRK V S
Sbjct:   60 SFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTS 104          
The following BLAST results are available for this feature:
BLAST of CX294355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HFC1B_ORYSJ5.224e-1642.40Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSFA8_ARATH1.520e-1534.27Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFA7B_ARATH3.744e-1428.40Heat stress transcription factor A-7b OS=Arabidops... [more]
HFB4C_ORYSJ1.204e-1266.04Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB4_ARATH2.054e-1280.49Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFC2B_ORYSJ2.054e-1277.50Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFB2C_ORYSJ2.054e-1264.15Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB4D_ORYSJ2.683e-1264.15Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFC2A_ORYSJ3.504e-1236.07Heat stress transcription factor C-2a OS=Oryza sat... [more]
HSF24_SOLPE7.807e-1275.56Heat shock factor protein HSF24 OS=Solanum peruvia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015F06SK FlavSen1 Citrus clementina cDNA clone C05015F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294355 ID=CX294355; Name=CX294355; organism=Citrus clementina; type=EST; length=546bp
GGCTGCAGGCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGA
TTGATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAG
AGGCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTC
CACGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGG
CCAAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTG
CGGAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGT
ACGCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCGCCT
GTTTAGCTAACCTGTTGAAGAAACCGGGATTTTCCTCGGCTCTTAATCAA
CAAGCAGAAGTTCACAGCAAAAAGAGAAGGCTGTTGAGGCCTACGACTAT
TGAATACTTTGATGATGTAAAATCCGCAAGCCTAAGTGTGAATGAACAGA
AAGAGAACCCAGATGCTACTTCTGATCCATCTCCGGCGTTGAATTT
back to top