CX294355

Overview
NameCX294355
Unique NameCX294355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRK 133
            SFVRQLNTYGFRK+ PD+WEFA+E F+RGQ HLL  I RRK
Sbjct:   77 SFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRK 117          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.020e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 169
            SFVRQLNTYGFRKI  D+WEFANE F +G +HLL  IHRRK     S+Q P P
Sbjct:   85 SFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRK-----SSQPPPP 132          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRK 133
            SFVRQLNTYGFRKI PD+WEFAN+ F RG+R LL  IHRRK
Sbjct:   99 SFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.060e-11
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST 154
            SFVRQLNTYGF+K+ PD+WEF+N+ F RG++ LL+ I RRK   +H T
Sbjct:   74 SFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQT 121          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 169
            SFVRQLNTYGFRK+ P++WEFANE F +G++ LL  IHRRK   +     P P
Sbjct:   81 SFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSAAATWPPFPPP 133          
The following BLAST results are available for this feature:
BLAST of CX294355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HFC1A_ORYSJ7.807e-1275.61Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFB4B_ORYSJ1.020e-1166.04Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2B_ORYSJ2.271e-1178.05Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2A_ARATH5.060e-1160.42Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB4A_ORYSJ8.631e-1158.49Putative heat stress transcription factor B-4a OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05015F06SK FlavSen1 Citrus clementina cDNA clone C05015F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294355 ID=CX294355; Name=CX294355; organism=Citrus clementina; type=EST; length=546bp
GGCTGCAGGCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGA
TTGATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAG
AGGCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTC
CACGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGG
CCAAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTG
CGGAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGT
ACGCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCGCCT
GTTTAGCTAACCTGTTGAAGAAACCGGGATTTTCCTCGGCTCTTAATCAA
CAAGCAGAAGTTCACAGCAAAAAGAGAAGGCTGTTGAGGCCTACGACTAT
TGAATACTTTGATGATGTAAAATCCGCAAGCCTAAGTGTGAATGAACAGA
AAGAGAACCCAGATGCTACTTCTGATCCATCTCCGGCGTTGAATTT
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