CX294359

Overview
NameCX294359
Unique NameCX294359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  210 ETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTV---PKQEEKKPE 491
            E P + VF AD+PG+   E+ V+V+   +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VTV   P  E KKP+
Sbjct:   62 EYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPK 160          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  210 ETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTV---PKQEEKKPE 491
            E P A  F  D+PGL   ++ V+V+  R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVTV   P  E KKP+
Sbjct:   59 ELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPK 154          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  111 WDPFH-----WFLSSAVTNAPSSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKKPE 491
            WDPF      WF +     A   A E            ET +A +FKADLPG+ ++++ V +   R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T+PK+ E +P+
Sbjct:   32 WDPFELANHPWFANRQGPPAFVPAFEVR----------ETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLPKRPEVQPK 152          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.019e-15
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  210 ETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTV---PKQEEKKPE 491
            E   A  F  D+PGL   ++ V+V+  R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVTV   P  E KKP+
Sbjct:   52 ELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPK 147          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  150 NAP--SSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTV---PKQEEKKP 488
            NAP  S   +   +A    D  E P + VF+ D+PGL   ++ V+V+   +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VTV   P  E KKP
Sbjct:   34 NAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKP 151          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  222 ARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKND-----KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTV---PKQEEKKPEV 494
            A V   D+PG+   ++ VEV+ G +L ISGER +   + +D     K+ R+ER  GKF+RRF LP++A ++ V+A  ++GVLTVTV   P  E KKP V
Sbjct:   61 ALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRV 159          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  132 LSSAVTNAPSSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGER--SKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQE-EKKPE 491
            +++A+  AP+SA +  H  +A +D IE+P A    AD PG+  +++ VE+  G +L ++GER  S   +E   K  R ER++  F R F LP+NA  + + A+M+ GVL VTVPK+E   KPE
Sbjct:   28 INNALGVAPTSAGKAGHT-HAPMDIIESPTAFELHADAPGMGPDDVKVELQEG-VLMVTGERKLSHTTKEAGGKVWRSERTAYSFSRAFSLPENANPDGITAAMDKGVLVVTVPKREPPAKPE 148          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSPC2_RICFE (Small heat shock protein C2 OS=Rickettsia felis GN=hspC2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  120 FHWFLSSAVTNAPSSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKK 485
            F  F +   T   SS+TE + +     D  ET      + +LPG+ ++++ + +D   IL I G++ ++ EEKN  +H  ER  G F R   LP N   + + A  ENG+L +T+PK+E+ K
Sbjct:   28 FDDFFNEFYTFPYSSSTEKNLIPRT--DISETDSGYSLEVELPGINQKDIDINID-NHILTIKGQKEEKSEEKNKNYHMRERYYGSFQRSISLPANINDDAINARFENGILHITIPKKEQGK 146          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  198 IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQI-------SGERSKEQEEKNDKWHRVER--SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQ--EEKK 485
            +D +ETP    F  D+PGL K ++ V ++  R+L +       +G+R +E+EE   K+ R+ER  S   F R+FRLP++A    + A  ENGVLTVTV K+   EKK
Sbjct:   57 VDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKK 163          
The following BLAST results are available for this feature:
BLAST of CX294359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HSP22_IPONI1.355e-1544.4418.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE1.355e-1547.4217.5 kDa class II heat shock protein OS=Zea mays P... [more]
SP21_STIAU1.770e-1534.85Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP23_MAIZE3.019e-1548.4517.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_SOYBN5.149e-1538.9817.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP19_ORYSJ7.435e-1444.4419.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS22C_CHLRE7.435e-1440.65Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]
HSPC2_RICFE8.220e-1333.61Small heat shock protein C2 OS=Rickettsia felis GN... [more]
HS186_ORYSJ6.959e-1241.1218.6 kDa class III heat shock protein OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC05015F10SK FlavSen1 Citrus clementina cDNA clone C05015F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294359 ID=CX294359; Name=CX294359; organism=Citrus clementina; type=EST; length=584bp
GAAGTTGTTGAGCATTTAATTACCGTGCCCACTTTGCCATAATGTCACTC
ATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGCTCTATCCAGTTTC
ATTATATGTATGGGATCCTTTCCACTGGTTCTTGTCCTCGGCCGTTACCA
ACGCGCCGTCTTCTGCTACGGAAACATCCCATGTCGCCAATGCTTGAATT
GACTGGATAGAGACTCCTCAGGCTCGCGTATTCAAAGCTGATCTTCCAGG
GCTGATGAAAGAAGAATTATACGTTGAGGTTGATTAGGGCAGGATTCTGC
AAATAAGCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGG
CATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCC
CGACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGC
TCACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTAAGGCTA
TTGAGATCTCTGGCTAGTGATACTGTAATGTTTTCAGATAGTGTCTTTGT
TGCTATAATTTGTACGAAGCAAGCCCTGGTGTTG
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