CX294361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 437 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + + +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 437 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y + E +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSK 623
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: HMG3M_HUMAN (Putative high mobility group protein B3-like protein OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11 Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 437 DPN PKRP S FF+F EF + K +P + V K GE WK++++++K PY+ +A K K +YEKD+ Y ++ +++G K Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAK 169
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11 Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 413 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+ Sbjct: 541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11 Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTK 437 DPN PKRP S FF+F EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y ++ + +GTK Sbjct: 25 DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK 105
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 428 DPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN Q E Sbjct: 20 DPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNADQEE 97
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11 Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 419 DPN PKR SAFF+F +R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11 Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 431 DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y QA+G Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAY---QAKG 166
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11 Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 422 DPN PKR S F F + R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ +Y Q Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 633
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: SSP1A_CAEEL (FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11 Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 3 Query: 192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 416 DPN PKR SA+ + R + K+D SVA V K GG KWK+MS DK + KAE+ K YEK+MK Y + Sbjct: 552 DPNAPKRATSAYMQWFLASRNELKED---GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRK 623 The following BLAST results are available for this feature:
BLAST of CX294361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294361 ID=CX294361; Name=CX294361; organism=Citrus clementina; type=EST; length=528bpback to top |