CX294361

Overview
NameCX294361
Unique NameCX294361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 428
            DPN PKR  SA+  F  E RE  ++++P   S   VGK  GE+WK++S+  +APY AKA   K  YE + + YN    E
Sbjct:   22 DPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAEADE 99
[Close]
BLAST of CX294361 vs. ExPASy Swiss-Prot
Match: NHP6_ASHGO (Non-histone chromosomal protein 6 OS=Ashbya gossypii GN=NHP6 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 3 
Query:  192 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 425
            DPN PKR  SA+  F  E R+  + ++P   S   VG+  GEKWK++S+ +K PY AKAE  K  YE + + YN  +A
Sbjct:   17 DPNAPKRAMSAYMFFANENRDIVRAENP-GISFGQVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
The following BLAST results are available for this feature:
BLAST of CX294361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NHP6_NEUCR8.057e-1143.04Non-histone chromosomal protein 6 OS=Neurospora cr... [more]
NHP6_ASHGO8.057e-1143.59Non-histone chromosomal protein 6 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionC05015G02SK FlavSen1 Citrus clementina cDNA clone C05015G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294361 ID=CX294361; Name=CX294361; organism=Citrus clementina; type=EST; length=528bp
ACATCTGCGTCTCTCTCTTTTTCTCTTTCCTCTTTTTCTCTCATTTGAAG
CCCTAACCCTAGCTCTATCTTTCTTCAGAAACAGGATTTGAAATGAAAGG
AGGTAAATCAAAGTCAGACACCAGAAACGCCAAGCTCTCTGTGAACAAGA
AGCCTGCCAAAGCTGGACGAAAATCGGGAAAGGCAGCTAAGGACCCGAAC
AAGCCAAAGAGGCCAGCCAGCGCCTTCTTTGTTTTCATGGAAGAATTCCG
TGAACAATACAAGAAGGATCATCCTAAGAACAAATCAGTTGCTGCTGTTG
GTAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATAAAGCA
CCGTATGTTGCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAGGATAT
GAAAAACTACAATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGAAGAAG
AGGAGTCTGAGAAGTCTATGTCAGAGGTGAATGATGAGGATGATGATGAA
AAAGGCAGTGGCGAGGAGGATGATGATG
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