CX294368

Overview
NameCX294368
Unique NameCX294368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA1_BACC0 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus cereus (strain AH820) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.065e-24
Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQFRGW 404
            GLP+ AYGG+++IME VAP GP YQAGT++GNP +M +GI  L+ L++ G YE L+++   L +GI++   K    I    + G    +FT   + +++ A+ +D   F   ++ ML+EGV  APS++  W
Sbjct:  275 GLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGAMLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGNFFKLMLQEGVNLAPSKYEAW 405          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_HELPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori (strain Shi470) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP+  +GGR +IM++++P G +YQAGTLSGNPLA+ AG+  L ++K   T Y  LN +   L QG+  + +    A+       MFGFFF E  V +F+DA KSDT  FA+ ++ ML +GVY A S F
Sbjct:  270 GLPLACFGGRAEIMDLLSPIGGVYQAGTLSGNPLAVCAGLSALYKIKRDKTLYTRLNALAVRLAQGLKKSAQSYNIALETLNRGSMFGFFFNENAVRDFDDALKSDTEMFAKFHQKMLFKGVYLACSSF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_COXBU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT-EGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AYGGRR+IM  ++P GP+YQAGTLSGNP+AM AG+ TLK L     Y  L + T  L  GI+   K A   +   +  G+FG  FT E  V  +  A   +   F   +  ML+ GVY APS F
Sbjct:  271 GMPVGAYGGRREIMNQLSPEGPVYQAGTLSGNPVAMAAGLATLKELTAENFYSNLKEKTERLVMGILSRAKAAKIPLTANFSCGIFGLIFTSEERVTRYAQAVNGNVEHFRSFFHKMLDNGVYLAPSAF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_COXBR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT-EGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AYGGRR+IM  ++P GP+YQAGTLSGNP+AM AG+ TLK L     Y  L + T  L  GI+   K A   +   +  G+FG  FT E  V  +  A   +   F   +  ML+ GVY APS F
Sbjct:  271 GMPVGAYGGRREIMNQLSPEGPVYQAGTLSGNPVAMAAGLATLKELTAENFYSNLKEKTERLVMGILSRAKAAKIPLTANFSCGIFGLIFTSEERVTRYAQAVNGNVEHFRSFFHKMLDNGVYLAPSAF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_COXBN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT-EGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AYGGRR+IM  ++P GP+YQAGTLSGNP+AM AG+ TLK L     Y  L + T  L  GI+   K A   +   +  G+FG  FT E  V  +  A   +   F   +  ML+ GVY APS F
Sbjct:  271 GMPVGAYGGRREIMNQLSPEGPVYQAGTLSGNPVAMAAGLATLKELTAENFYSNLKEKTERLVMGILSRAKAAKIPLTANFSCGVFGLIFTSEERVTRYAQAVNGNVEHFRSFFHKMLDNGVYLAPSAF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_COXB1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii (strain CbuK_Q154) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT-EGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AYGGRR+IM  ++P GP+YQAGTLSGNP+AM AG+ TLK L     Y  L + T  L  GI+   K A   +   +  G+FG  FT E  V  +  A   +   F   +  ML+ GVY APS F
Sbjct:  271 GMPVGAYGGRREIMNQLSPEGPVYQAGTLSGNPVAMAAGLATLKELTAENFYSNLKEKTERLVMGILSRAKAAKIPLTANFSCGIFGLIFTSEERVTRYAQAVNGNVEHFRSFFHKMLDNGVYLAPSAF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_CLOPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium perfringens (strain SM101 / Type A) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 59/130 (45.38%), Postives = 82/130 (63.08%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-GPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP  AYGGRR+IME ++P G +YQAGT+SGNP+ M+AG+ T+K+L E P  Y+++ KI  +L +GII+  KK G  +      GM   FFT+   V  ++D K  D  +F R +  ML +G    PSQF
Sbjct:  270 GLPCGAYGGRREIMENLSPLGGVYQAGTMSGNPIVMSAGLATVKKLYENPSYYDHIEKIGSKLEKGIIEIAKKKGLGLVVNRQGGMMTLFFTDLKEVKCYDDVKTCDGERFKRYFLHMLNKGFNIPPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_CLOCE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AY GR++IME VAP G +YQAGTLSGNP+AM AG+  L+ LK +P  YE +NK    L  G     +K    I    +  +   FF++ PV N+++AK S+T  +A  ++ ML +G+Y APSQF
Sbjct:  270 GMPVGAYAGRKEIMEHVAPCGGVYQAGTLSGNPVAMAAGLAQLEILKSKPEIYEDINKKAEFLGNGFEKIVQKYKAPITLNRVGSLLCGFFSQNPVTNYQEAKLSNTNYYAAYFKSMLNKGIYLAPSQF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_CAMFF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=hemL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 53/129 (41.09%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+   A+  + +IMEM++P G +YQAGTLSGNP+AM AG+ +L ++   P  Y+ L   +  + + + ++ KKAG A+       M+G+FF + PV N++DA  SDT  FA+ +  M++ G+Y APSQF
Sbjct:  267 GMSAAAFAAKNEIMEMISPLGGVYQAGTLSGNPVAMAAGLASLSKIYNSPNLYKDLENKSKFIVEALENSAKKAGIALQTEVRGSMWGYFFNDRPVKNYKDALNSDTKMFAKFHAQMIKRGIYLAPSQF 395          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_PSYWF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter sp. (strain PRwf-1) GN=hemL PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE----GPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV A+GG+R+IME +AP G +YQAGTLSGNPLAM AGI   + L   G YE +      L +GI  A  K G  +    + GMFG FF +    G   NF++    D  KF   + GML+ G+Y APS +
Sbjct:  271 GLPVGAFGGKREIMECIAPMGGVYQAGTLSGNPLAMRAGIAMFEDLTVEGFYEGVADKVTYLVEGIQAAAHKHGIKLRSTKLGGMFGLFFVKDEATGVPQNFDEVTACDMDKFNTFFHGMLDRGIYLAPSAY 402          
The following BLAST results are available for this feature:
BLAST of CX294368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_BACC02.065e-2439.69Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA_HELPS2.697e-2445.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_COXBU2.697e-2444.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_COXBR2.697e-2444.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_COXBN2.697e-2444.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_COXB12.697e-2444.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_CLOPS2.697e-2445.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_CLOCE2.697e-2445.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_CAMFF2.697e-2441.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_PSYWF3.523e-2445.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]

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Properties
Property NameValue
Genbank descriptionC05015G12SK FlavSen1 Citrus clementina cDNA clone C05015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294368 ID=CX294368; Name=CX294368; organism=Citrus clementina; type=EST; length=426bp
TTCGGCACGAGGGGCTGCCAGTTCGTGCTTATGGAGGAAGAAGGGATATT
ATGGAGATGGTGGCACCGGCAGGCCCAATGTACCAGGCTGGGACCTTAAG
TGGGAATCCATTGGCAATGACCGCTGGGATACACACCCTTAAACGATTGA
AGGAGCCAGGAACTTATGAATACTTGAATAAGATCACAGGTGAACTTACT
CAAGGCATCATTGATGCTGGAAAGAAAGCTGGGCATGCCATTTGTGGAGG
GTATATAAGTGGGATGTTTGGATTTTTCTTTACCGAAGGGCCTGTTTACA
ACTTCGAGGATGCAAAGAAGAGTGATACCACAAAGTTTGCAAGAATTTAC
AGGGGAATGCTGGAGGAAGGTGTATACTTCGCACCTTCACAGTTTAGAGG
CTGGGTTCACAAGCTTGGCACAATCA
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