CX294368

Overview
NameCX294368
Unique NameCX294368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ROSS1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Roseiflexus sp. (strain RS-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.755e-34
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP  AYGGRR++ME++APAGP+YQAGTLSGNPLAM AGI TL+ +  PG +E L + T  L  G   A   A   +   Y   M+GFFFT  PV ++  AKK+DT ++AR +  MLE GVY AP+QF
Sbjct:  272 GLPAAAYGGRRELMELIAPAGPVYQAGTLSGNPLAMAAGIATLRIIGAPGVFERLEQATAALCAGFERAAADADIPLRAAYAGSMWGFFFTGDPVVDYASAKKADTRRYARFFHAMLERGVYLAPAQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA2_BREBN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.755e-34
Identity = 71/130 (54.62%), Postives = 88/130 (67.69%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQFRG 401
            GLPV AYGG+R+IM+ VAPAGP+YQAGTLSGNPLAM AG+ TL+ L +PG YE L K++  L +G+ D  KK G       +  M   FFTE PV N+E AK SD  +F+  +  +LEEGV   PSQF G
Sbjct:  272 GLPVGAYGGKREIMQQVAPAGPIYQAGTLSGNPLAMAAGLTTLQELSKPGAYERLEKMSARLAEGLADNAKKLGIPHTLNRVGSMVCLFFTETPVINYETAKTSDLERFSAYFSYLLEEGVMIPPSQFEG 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_DESAP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulforudis audaxviator (strain MP104C) GN=hemL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.406e-34
Identity = 71/128 (55.47%), Postives = 88/128 (68.75%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIME VAP+GP+YQAGTLSGNPLAM AGI T+K L EPG YE L   T  L +G+ +A  +AG  +       M   FF  GPV +F  A +SDT +++R ++ +LE GVY AP+QF
Sbjct:  274 GLPVGAYGGRRDIMEQVAPSGPVYQAGTLSGNPLAMAAGISTIKALAEPGVYEALESKTLRLARGLEEAAARAGAEVYITQTGSMLCVFFQPGPVTDFAGALRSDTARYSRYFQALLERGVYIAPAQF 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_GEOBB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemL PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.864e-33
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV A+GG+++IM +++PAG +YQAGTLSGNPLAMTAGI TLK LK+PG Y+ L + +  + +GI  A K AG  I    +  MF  FF++ PVY+++ A K DT  FA  ++ ML EG+Y APSQF
Sbjct:  272 GLPVGAFGGKKEIMSLLSPAGGVYQAGTLSGNPLAMTAGIETLKLLKQPGFYQKLEEKSAFVAEGIAKAAKDAGFPIYSTRVGSMFCAFFSKDPVYDWDSAAKCDTKAFAAYFKAMLNEGIYLAPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA2_BACLD (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.434e-33
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQFRG 401
            GLPV AYGG+ +IME +AP+GP+YQAGTLSGNPLAMTAG+ TLK+L  P +Y   ++    L +GI +A +K G          M GFFFT GPV N++ AK+SD   FA  Y+GM +EGV+  PSQF G
Sbjct:  273 GLPVGAYGGKAEIMEKIAPSGPIYQAGTLSGNPLAMTAGLETLKQL-TPESYREFSRKADRLEKGISEAAEKNGIPCTFNRAGSMIGFFFTNGPVINYDTAKQSDLGLFAEYYKGMADEGVFLPPSQFEG 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_GEOMG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.179e-33
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV A+GG+R+IM+ ++P+G +YQAGTLSGNPLAMTAGI TLK L+E G Y  L + +  L +GI DA ++AG+ I    +  MF  FFT G V+++  A   DT  FA  +R MLEEG+Y APSQF
Sbjct:  272 GLPVGAFGGKREIMQQLSPSGGVYQAGTLSGNPLAMTAGIETLKLLQEDGFYGRLEEKSRALAEGIADAARRAGYPIYSTRVGSMFCAFFTNGEVHDWTSAAMCDTKSFATFFRSMLEEGIYLAPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_DESHD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=hemL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.179e-33
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGG+R  ME VAP+GP+YQAGTLSGNPLAM AG+ TLK L++ G YE L K T  L +G+    ++ G  I    +  MF  FFT+ PV +F+ A  SD  +F   +RGMLE G+Y APSQ+
Sbjct:  274 GLPVAAYGGKRKYMEQVAPSGPIYQAGTLSGNPLAMAAGLATLKLLQQEGVYEGLEKKTARLAEGLQSIAQELGFPIWVNSVGAMFSAFFTDQPVIDFKSACSSDVERFGSFFRGMLERGIYLAPSQY 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_HERA2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=hemL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.423e-33
Identity = 70/128 (54.69%), Postives = 84/128 (65.62%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP  AYGGRR+IM+MVAPAG MYQAGTLSGNPLAM AGI TL+ + +P  +E L  +T  L QG   A  K G          M+GFFF    VY+F  AK++DT  F + +  MLE+GVY APSQF
Sbjct:  272 GLPAAAYGGRREIMQMVAPAGTMYQAGTLSGNPLAMVAGIVTLREIAKPEVFERLTGVTSTLCQGFWKAAFKNGIPFQAHKAGSMWGFFFAGDEVYDFTSAKRADTAMFGKFFHAMLEQGVYLAPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_DESHY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfitobacterium hafniense (strain Y51) GN=hemL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.423e-33
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGG+R  ME VAP+GP+YQAGTLSGNPLAM AG+ TLK L++ G YE L K T  L +G+    ++ G  I    +  MF  FFT+ PV +F+ A  SD  +F   +RGMLE G+Y APSQ+
Sbjct:  274 GLPVAAYGGKRKYMEQVAPSGPIYQAGTLSGNPLAMAAGLATLKLLQQEGVYEGLEKKTTRLAEGLQSIAQELGFPIWVNSVGAMFSAFFTDQPVIDFKSACSSDVERFGSFFRGMLERGIYLAPSQY 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_XANCH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. phaseoli GN=hemL PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.250e-33
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV AYGGRRD+ME VAPAGP+YQAGTLSGNP+AM AG+  L+ ++EPG +  L++ T  L +G+ DA + AG A+    + GMFG FFT+  V ++  A   D T F R +  ML+ GVY APS +
Sbjct:  272 GMPVGAYGGRRDLMEQVAPAGPIYQAGTLSGNPVAMAAGLAMLELVQEPGFHTRLSEATSMLCEGLEDAARAAGIAVTTNQVGGMFGLFFTDDVVESYAQATACDITSFNRFFHAMLQRGVYLAPSAY 399          
The following BLAST results are available for this feature:
BLAST of CX294368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_ROSS13.755e-3453.91Glutamate-1-semialdehyde 2,1-aminomutase OS=Roseif... [more]
GSA2_BREBN3.755e-3454.62Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Brev... [more]
GSA_DESAP6.406e-3455.47Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_GEOBB1.864e-3353.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA2_BACLD2.434e-3353.85Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA_GEOMG3.179e-3353.91Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_DESHD3.179e-3353.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_HERA25.423e-3354.69Glutamate-1-semialdehyde 2,1-aminomutase OS=Herpet... [more]
GSA_DESHY5.423e-3353.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_XANCH9.250e-3351.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]

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Properties
Property NameValue
Genbank descriptionC05015G12SK FlavSen1 Citrus clementina cDNA clone C05015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294368 ID=CX294368; Name=CX294368; organism=Citrus clementina; type=EST; length=426bp
TTCGGCACGAGGGGCTGCCAGTTCGTGCTTATGGAGGAAGAAGGGATATT
ATGGAGATGGTGGCACCGGCAGGCCCAATGTACCAGGCTGGGACCTTAAG
TGGGAATCCATTGGCAATGACCGCTGGGATACACACCCTTAAACGATTGA
AGGAGCCAGGAACTTATGAATACTTGAATAAGATCACAGGTGAACTTACT
CAAGGCATCATTGATGCTGGAAAGAAAGCTGGGCATGCCATTTGTGGAGG
GTATATAAGTGGGATGTTTGGATTTTTCTTTACCGAAGGGCCTGTTTACA
ACTTCGAGGATGCAAAGAAGAGTGATACCACAAAGTTTGCAAGAATTTAC
AGGGGAATGCTGGAGGAAGGTGTATACTTCGCACCTTCACAGTTTAGAGG
CTGGGTTCACAAGCTTGGCACAATCA
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