CX294368

Overview
NameCX294368
Unique NameCX294368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_NITOC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=hemL PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.278e-31
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT-EGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV A+GGR+ IMEM+AP GP+YQAGTLSGNP+AM AG+ TLK ++ PG YE+L++ T +L  GI+   + A   +    + GMFG FFT E  +  +E A      +F   Y GMLE G+YFAPS F
Sbjct:  272 GLPVGAFGGRQKIMEMIAPLGPVYQAGTLSGNPVAMAAGLATLKLIQAPGFYEHLSRQTQKLVNGILGRARDADIPMTANQVGGMFGLFFTGEEEITCYEQATNCHLDRFKSFYHGMLEHGIYFAPSAF 400          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_PELCD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 72/139 (51.80%), Postives = 91/139 (65.47%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQFR-GWVHKLGTI 425
            GLPV A+GGR+DIM  +AP G +YQAGTLSGNPLAM+AGI TLK ++E G YE L + +  L +G+  A   AG   C   +  MF  +F  GPV +F DAK SDT  FAR +  ML+ GV+ APSQF  G+V    T+
Sbjct:  272 GLPVGAFGGRQDIMRHLAPDGGVYQAGTLSGNPLAMSAGIATLKLIREEGVYEQLEQRSAYLAEGLRQAAAAAGVPACLQRVGSMFCNYFQTGPVTSFADAKASDTEAFARYFGQMLDNGVHLAPSQFEAGFVSLAHTV 410          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_GEOSL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter sulfurreducens GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV A+GG++DIM++++P+G +YQAGTLSGNPLAMTAGI TLK L+  G YE L + +  L +GI +A K AG+ I    +  MF  FFT   V ++  A   DT  FA  +R MLE+G+Y APSQF
Sbjct:  272 GLPVGAFGGKKDIMKLLSPSGGVYQAGTLSGNPLAMTAGIETLKLLQADGFYEQLEQTSRRLAEGITEAAKSAGYPIYPTRVGSMFCTFFTSNEVKDWPTATTCDTKAFAAFFRMMLEKGIYLAPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ECOLC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTSRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ECO8A (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli O8 (strain IAI1) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTSRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ECO55 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain 55989 / EAEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTSRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ECO24 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTSRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_THISH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRR++ME +AP GP+YQAGTLSGNP+AM AG+ TL+ +  PG Y+ L + T  +  G++ A  +AG  +    + GMFG FF+E PV NF  A + D  +F   +  MLE GVY APS +
Sbjct:  270 GMPVGAFGGRREVMEQLAPLGPVYQAGTLSGNPVAMAAGLKTLEIISRPGFYDELTRKTRVMVDGVLTAAGEAGIPMTANQVGGMFGLFFSEQPVTNFYQATQCDLDRFRLFFHEMLERGVYLAPSAY 397          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SHIBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella boydii serotype 4 (strain Sb227) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SHIB3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
The following BLAST results are available for this feature:
BLAST of CX294368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_NITOC2.278e-3151.16Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitros... [more]
GSA_PELCD2.975e-3151.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Peloba... [more]
GSA_GEOSL2.975e-3152.34Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_ECOLC2.975e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]
GSA_ECO8A2.975e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]
GSA_ECO552.975e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]
GSA_ECO242.975e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]
GSA_THISH3.886e-3148.44Glutamate-1-semialdehyde 2,1-aminomutase OS=Thioal... [more]
GSA_SHIBS3.886e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIB33.886e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]

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Properties
Property NameValue
Genbank descriptionC05015G12SK FlavSen1 Citrus clementina cDNA clone C05015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294368 ID=CX294368; Name=CX294368; organism=Citrus clementina; type=EST; length=426bp
TTCGGCACGAGGGGCTGCCAGTTCGTGCTTATGGAGGAAGAAGGGATATT
ATGGAGATGGTGGCACCGGCAGGCCCAATGTACCAGGCTGGGACCTTAAG
TGGGAATCCATTGGCAATGACCGCTGGGATACACACCCTTAAACGATTGA
AGGAGCCAGGAACTTATGAATACTTGAATAAGATCACAGGTGAACTTACT
CAAGGCATCATTGATGCTGGAAAGAAAGCTGGGCATGCCATTTGTGGAGG
GTATATAAGTGGGATGTTTGGATTTTTCTTTACCGAAGGGCCTGTTTACA
ACTTCGAGGATGCAAAGAAGAGTGATACCACAAAGTTTGCAAGAATTTAC
AGGGGAATGCTGGAGGAAGGTGTATACTTCGCACCTTCACAGTTTAGAGG
CTGGGTTCACAAGCTTGGCACAATCA
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