CX294368

Overview
NameCX294368
Unique NameCX294368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_MYXXD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxococcus xanthus (strain DK 1622) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+P+ AYGGRRDIME VAPAGP+YQ+GTLSGNP+A+ AG+  LK L  PGTY  L +++  L  G++   K A   +    +  M   FFT  PVY++  AKK+DT +F + +  ML E VY  PSQF
Sbjct:  272 GMPMGAYGGRRDIMEKVAPAGPVYQSGTLSGNPVAVAAGLACLKALAAPGTYARLEEVSRMLEVGLLAEAKAADVPVTVNRVGSMLTVFFTGEPVYDYTSAKKADTARFGKFFHAMLNESVYLPPSQF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_AERS4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Aeromonas salmonicida (strain A449) GN=hemL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GG++ +M+ +AP GP+YQAGTLSGNP+AM AG+  L  L EPG YE LN  T  + +G+  A  K G  +   Y+ GMFGFFFT+ P +  +E   + D  +F R Y  MLEEGVY APS +
Sbjct:  270 GMPVGAFGGKKKVMQHIAPTGPVYQAGTLSGNPVAMAAGLTMLDLLLEPGLYEQLNAKTARVAEGLKAAAAKHGIPLAINYVGGMFGFFFTDEPEITRYEQVTRCDMERFKRFYHLMLEEGVYLAPSAY 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA2_GEOKA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geobacillus kaustophilus GN=hemL2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 70/130 (53.85%), Postives = 83/130 (63.85%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQFRG 401
            GLPV AYGG+ +IME+VAP+GP+YQAGTLSGNPLAMTAG  TL++L  P TYE L +    L  G+  A +K            M GFFFT  PV N+E AK SD   FA  YR M  EG++  PSQF G
Sbjct:  273 GLPVGAYGGKAEIMELVAPSGPVYQAGTLSGNPLAMTAGYETLRQL-TPETYEELGRKAARLADGLHQAAEKYDIPHTINRAGSMIGFFFTNEPVVNYETAKTSDLELFAAYYREMANEGIFLPPSQFEG 401          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_THET8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=hemL PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP  AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+ TL+ L+E PG Y YL  +   L  G+ +  K+ G       +  M   FFTEGPV  F+DA+++DT  F R + G+L+ G+Y+ PS F
Sbjct:  271 GLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF 399          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_THET2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLP  AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+ TL+ L+E PG Y YL  +   L +G+ +   + G       +  M   FFTEGPV  F+DAK++DT  F R + G+L+ G+Y+ PS F
Sbjct:  274 GLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYRYLEDLGARLERGLKEVLAQKGIPHAVNRVGSMVTVFFTEGPVVTFQDAKRTDTELFKRFFHGLLDRGIYWPPSNF 402          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SHISS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella sonnei (strain Ss046) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SHIDS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLHELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_MAGSM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Magnetococcus sp. (strain MC-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGG+ ++M  V+PAGP+YQAGTLSGNPLA  AG+ TL+ + +PG YE L   T  LT GI  A  +AG      +I  MFG FFT+   VYNF DA K+D  +F   +  MLEEGVYFAPS +
Sbjct:  277 GLPVGAYGGKMELMNQVSPAGPVYQAGTLSGNPLATAAGLATLEAISQPGFYETLTSRTQRLTVGIGKALDEAGIPHVSYHIGSMFGLFFTDAREVYNFADAAKNDHNRFKDWFHCMLEEGVYFAPSPY 405          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ENT38 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Enterobacter sp. (strain 638) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGR+D+ME +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L  +T +L  G+++A ++ G  +   ++ GMFG FFT+   V  ++D  K D  +F R +  MLEEGVY APS F
Sbjct:  270 GMPVGAFGGRKDVMEALAPTGPVYQAGTLSGNPIAMAAGFACLTEVAQPGIHETLTDLTAQLANGLLEAAEETGVPLVVNHVGGMFGIFFTDAKTVTCYQDVVKCDVERFKRFFHLMLEEGVYLAPSAF 398          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ECOSM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 61/129 (47.29%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            G+PV A+GGRRD+M+ +AP GP+YQAGTLSGNP+AM AG   L  + +PG +E L+++T  L +G+++A ++AG  +   ++ GMFG FFT+   V  ++D    D  +F R +  ML+EGVY APS F
Sbjct:  270 GMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF 398          
The following BLAST results are available for this feature:
BLAST of CX294368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_MYXXD3.886e-3150.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxoco... [more]
GSA_AERS43.886e-3149.61Glutamate-1-semialdehyde 2,1-aminomutase OS=Aeromo... [more]
GSA2_GEOKA3.886e-3153.85Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geob... [more]
GSA_THET85.075e-3151.16Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermu... [more]
GSA_THET25.075e-3151.16Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermu... [more]
GSA_SHISS5.075e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIDS5.075e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_MAGSM5.075e-3154.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Magnet... [more]
GSA_ENT385.075e-3148.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Entero... [more]
GSA_ECOSM5.075e-3147.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]

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Properties
Property NameValue
Genbank descriptionC05015G12SK FlavSen1 Citrus clementina cDNA clone C05015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294368 ID=CX294368; Name=CX294368; organism=Citrus clementina; type=EST; length=426bp
TTCGGCACGAGGGGCTGCCAGTTCGTGCTTATGGAGGAAGAAGGGATATT
ATGGAGATGGTGGCACCGGCAGGCCCAATGTACCAGGCTGGGACCTTAAG
TGGGAATCCATTGGCAATGACCGCTGGGATACACACCCTTAAACGATTGA
AGGAGCCAGGAACTTATGAATACTTGAATAAGATCACAGGTGAACTTACT
CAAGGCATCATTGATGCTGGAAAGAAAGCTGGGCATGCCATTTGTGGAGG
GTATATAAGTGGGATGTTTGGATTTTTCTTTACCGAAGGGCCTGTTTACA
ACTTCGAGGATGCAAAGAAGAGTGATACCACAAAGTTTGCAAGAATTTAC
AGGGGAATGCTGGAGGAAGGTGTATACTTCGCACCTTCACAGTTTAGAGG
CTGGGTTCACAAGCTTGGCACAATCA
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