CX294546

Overview
NameCX294546
Unique NameCX294546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 67/207 (32.37%), Postives = 96/207 (46.38%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAK--FGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNLQGKWSVPDA-------AEVQHPTATQSQTSQLTK 596
            PIDE  VQ LK ++ K  V ++KEDL+L                      KK+   K  + Q  N+      +  SAK  +GW+ANMER+MKAQ + D S+  +M  ++  EINP+H  I  L   ++   +D     +V LLY+ AL+SS F  E P    ++IY M  + L      P A        E   P      TS++ K
Sbjct:  232 PIDEYCVQQLKEFEGKTLVSVTKEDLELPEDEEEK---------------KKQEEGKQKTKQKKNQ-----SLRTSAKSTYGWTANMERIMKAQALRDNSTTGYMAAKKHLEINPDHSFIDTLRQKAETDKNDKSVKDLVILLYETALLSSDFGLEGPQTHANRIYRMNKLGLGTDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEK 418          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX-----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKA--QTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            P+DE  VQ L  YKEK    + + D+DL                   +G    +IK  L D+V   ++S RL+ S C LV+ ++G +ANMER++KA  Q V D+        +RV E+NP+HPI++ +    +   +D       DLLYD AL++ G   ++P      + E++
Sbjct:  474 PVDEWVVQALTEYKEKKLKAVDRGDVDLDSEEEKKEKETKQEEARKEYGDLISFIKSHLEDRVKDARLSKRLTDSACCLVADEYGINANMERILKAMNQPVPDS--------KRVLELNPDHPIMKIMTEIFRENKEDARLTDYADLLYDQALLTEGSPIKDPLRFTRLVSELM 639          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYCPA (Chaperone protein htpG OS=Mycobacterium paratuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDL---GXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P+DE+ V  +  +  K    I+K ++DL   G             F     W+K  L D V  V++SNRL+ SP  L++  FG +  + RL +A      S  +   G+R+ E+NP+HP++  L  A ++  DD       +LLY  AL++ G   ++PA     + + L   L
Sbjct:  477 PVDEVWVGTVTEFDGKPLQSIAKGEVDLSAEGEESQAERDEQQKEFADLLAWLKDTLSDHVKEVRLSNRLTDSPACLITDAFGITPALARLYRA------SGQDIPVGKRILELNPKHPLVTGLRQAHQDRADDPSVAETAELLYGTALLAEGGALDDPARFAEILADRLARTL 644          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYCA1 (Chaperone protein htpG OS=Mycobacterium avium (strain 104) GN=htpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDL---GXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P+DE+ V  +  +  K    I+K ++DL   G             F     W+K  L D V  V++SNRL+ SP  L++  FG +  + RL +A      S  +   G+R+ E+NP+HP++  L  A ++  DD       +LLY  AL++ G   ++PA     + + L   L
Sbjct:  477 PVDEVWVGTVTEFDGKPLQSIAKGEVDLSAEGEESQAEREEQQKEFADLLAWLKDTLSDHVKEVRLSNRLTDSPACLITDAFGITPALARLYRA------SGQDIPVGKRILELNPKHPLVTGLRQAHQDRADDPSVAETAELLYGTALLAEGGALDDPARFAEILADRLARTL 644          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKE-DLDLGXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P DE A+  LK +  K  VDI+K+ +L+               +      ++  LGDKV  V +S++L  SPC + + +FGWSANMER+MKAQ + DT SM   R  R  E N                  D     +  LL++ +L+ SGFT E P+    +I++++ + L
Sbjct:  496 PNDEYAMTQLKEFDGKKLVDITKDFELEETEEEKKDREAEEKEYEGLAKSLENILGDKVEKVVVSHKLIGSPCAIRTGQFGWSANMERIMKAQALRDT-SMSSRRSSRPTEGN------------------DRTVKSITQLLFETSLLVSGFTIEEPSGFAGRIHKLVSLGL 648          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_GEOUR (Chaperone protein htpG OS=Geobacter uraniireducens (strain Rf4) GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX-----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            P+DE  VQ+L  Y  K    + + DL+L                   +    D++K++L DKV  V+ S+RL+ S C LV+ ++G +ANME+++KA       + +    +RV E+NP+HP++Q L++  +   ++        LLYD AL++ G    +P      + E++
Sbjct:  474 PVDEWVVQSLTDYDGKKLHAVDRGDLELDSAEEKKEKEAKQEEAKKQYQGVLDFVKEQLKDKVKEVRFSSRLTDSACCLVADEYGLNANMEKILKAM------NQDVPESKRVLELNPDHPLMQVLSSIFEKDKENPRLADYCGLLYDQALLTEGSPVPDPLRFTRLVAELM 639          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 50/174 (28.74%), Postives = 90/174 (51.72%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEK-NFVDISKEDLDLGXXXXXXXXXXXXX--FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRV-VDLLYDAALVSSGFTPENPAELGSKIYEMLGMN 512
            PIDE  V  L  + +K  F ++++  +                  F     ++KK L DK+  V IS  L+ SP +LVS  +G +AN ER+MKAQ     +  +F   +++ EINP HP+I+ L        ++++  +V   +LY+ + +++G++ +NP      IY+++ +N
Sbjct:  551 PIDEYLVPQLDKFDDKYKFTNLARSGVKFNEDKEEEDQRKQTAEEFKPLLSYLKKTLSDKLEKVVISKVLADSPSILVSNSWGVTANQERIMKAQAHQANAQPQF-NSKKIMEINPSHPLIKKLLNRLNEFGEEDETTKVSAHVLYETSALTAGYSIDNPTNFADFIYKLMMIN 723          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYCUA (Chaperone protein htpG OS=Mycobacterium ulcerans (strain Agy99) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDL---GXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDD---NDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P+DE+ V  +  +  K    ++K ++DL   G             F     W+K+ LG++V  V++S RL+ SP  L++  FG +  + R+ +A      +  +   G+R  E+NP HP++  L  A  +  DD          +LLY  AL++ G  P++PA     + + L   L
Sbjct:  478 PVDEVWVGVVNEFDGKPLQSVAKGEVDLDSDGEGSEAEREEQQKEFADLLGWLKETLGEQVKEVRLSTRLTESPACLITDTFGITPALARIYRA------TGQDVPVGKRTLELNPTHPLVIGLRQAQASADDDAKKEAVSETAELLYGTALLAEGGAPDDPARFAELLADRLTRTL 648          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTU (Chaperone protein htpG OS=Mycobacterium tuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX---FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDD--NDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P+DE+ V  +  +  K    ++K ++DL                 F     W+++ L D V  V++S RL+ SP  L++  FG +  + R+ +A      S  E   G+R+ E+NP HP++  L  A ++  DD         +LLY  AL++ G   E+PA     + E L   L
Sbjct:  478 PVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLRQAHQDRADDAEKSLAETAELLYGTALLAEGGALEDPARFAELLAERLARTL 647          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTA (Chaperone protein htpG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX---FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDD--NDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 515
            P+DE+ V  +  +  K    ++K ++DL                 F     W+++ L D V  V++S RL+ SP  L++  FG +  + R+ +A      S  E   G+R+ E+NP HP++  L  A ++  DD         +LLY  AL++ G   E+PA     + E L   L
Sbjct:  478 PVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLRQAHQDRADDAEKSLAETAELLYGTALLAEGGALEDPARFAELLAERLARTL 647          
The following BLAST results are available for this feature:
BLAST of CX294546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
HS904_HUMAN2.935e-1832.37Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]
HTPG_PELPD8.541e-1832.18Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_MYCPA5.536e-1729.31Chaperone protein htpG OS=Mycobacterium paratuberc... [more]
HTPG_MYCA15.536e-1729.31Chaperone protein htpG OS=Mycobacterium avium (str... [more]
HSP82_AJECA9.443e-1732.56Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HTPG_GEOUR6.121e-1629.07Chaperone protein htpG OS=Geobacter uraniireducens... [more]
ENPL_DICDI1.364e-1528.74Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
HTPG_MYCUA8.838e-1527.12Chaperone protein htpG OS=Mycobacterium ulcerans (... [more]
HTPG_MYCTU1.154e-1427.84Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCTA1.154e-1427.84Chaperone protein htpG OS=Mycobacterium tuberculos... [more]

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Properties
Property NameValue
Genbank descriptionC05054A06SK FlavRip1 Citrus clementina cDNA clone C05054A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294546 ID=CX294546; Name=CX294546; organism=Citrus clementina; type=EST; length=673bp
ATCCCATCGATGAGATTGCGGTCCAGAACCTGAAATCGTATAAGGAGAAG
AATTTTGTCGACATTAGCAAGGAAGACTTGGATTTAGGTGAAAAGAATGA
GGAAAAAGAGAAGGTGATGAAGGAAGAGTTTGGCCAAACTTGTGATTGGA
TTAAGAAGCGATTGGGTGACAAAGTAGCTAGTGTTCAAATCTCAAATCGT
CTGAGCTCATCACCCTGTGTTCTGGTTTCTGCTAAGTTTGGTTGGTCAGC
CAACATGGAGAGGTTAATGAAGGCTCAAACAGTTGGTGATACCTCAAGTA
TGGAGTTCATGAGAGGAAGAAGAGTGTTTGAGATTAATCCTGAACACCCC
ATCATTCAAAACCTGAATGCTGCAAGCAAAAATTGCCCGGATGACAATGA
TGCCCTTCGAGTTGTAGATTTATTGTATGATGCAGCTCTGGTCTCTAGTG
GATTTACTCCTGAGAATCCGGCAGAGCTTGGCAGCAAGATATATGAAATG
TTAGGCATGAATTTACAAGGTAAATGGTCAGTTCCAGATGCTGCTGAGGT
TCAGCATCCAACAGCAACCCAATCACAGACCTCCCAACTTACGAAGCTGA
GGTGGTCGAGCCAGCAGAAGCCGGTGGTCAGAAATGAGGAGCTCACATTT
TTCCTTTTTCTGTCCTTATTTAG
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