CX294561

Overview
NameCX294561
Unique NameCX294561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.537e-53
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLA 400
            V+E+MTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF KCK +PS+W +IS GGL+RIYE+YTWK+YSERLMTL GVYGFWKYVS LERRETRRY+EMFY LK+R L   VPL+
Sbjct:  676 VIESMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFDKCKADPSYWDEISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASQVPLS 800          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.619e-53
Identity = 91/129 (70.54%), Postives = 109/129 (84.50%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            V+EAMTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF KCK++ ++W  IS GGL+RIYE+YTWK+YSERLMTL GVYGFWKYVS LERRETRRY+EMFY LK+R L  +VPLA + +
Sbjct:  676 VIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVPLAVDGE 804          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.033e-53
Identity = 94/129 (72.87%), Postives = 107/129 (82.95%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            VVEAMTCGLPTFAT +GGPAEII HG SG+HIDPY  D+A+ L+ DFF KC+  PSHW KIS GGL+RI E+YTWK+YSERLMTL GVYGFWKYVS LERRETRRYLEM Y LK+R +  +VPLA E +
Sbjct:  684 VVEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQGDKASALLVDFFDKCQAEPSHWSKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVEGE 812          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.879e-53
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +Q AEL+ +FF KCK +PS W  IS GGLKRI E+YTW+IYSERL+TLAGVYGFWK+VSKL+R E RRYLEMFY LK+R L +SVPLA +
Sbjct:  681 VVEAMTCGLPTFATLHGGPAEIIVHGKSGFHIDPYHGEQVAELLVNFFEKCKTDPSQWDAISAGGLKRIQEKYTWQIYSERLLTLAGVYGFWKHVSKLDRLEIRRYLEMFYALKYRKLAESVPLAKD 807          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52
Identity = 94/127 (74.02%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAMTCGLPTFATC+GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS  GL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+RRE+RRYLEMFY LK+R L +SVPLA E
Sbjct:  679 VVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52
Identity = 92/129 (71.32%), Postives = 110/129 (85.27%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            V+EAMTCGLPTFAT +GGPAEII +G SG+HIDPY  D+A+ L+  FFGKC+E+PSHW KIS GGL+RI E+YTWK+YSERLMTL+GVYGFWKYVS L+RRETRRYLEM Y LK+R +  +VPLA E +
Sbjct:  684 VIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVSNLDRRETRRYLEMLYALKYRKMAATVPLAVEGE 812          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.994e-52
Identity = 93/129 (72.09%), Postives = 109/129 (84.50%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            VVE+MTCGLPTFAT +GGPAEII +G SGFHIDPY  D+A+ L+ +FF KC+E+PSHW KIS GGL+RI E+YTWK+YSERLMTL GVYGFWKYVS LERRETRRYLEM Y LK+R +  +VPLA E +
Sbjct:  684 VVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSHWTKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVEGE 812          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLA 400
            V+EAMTCGLPTFAT HGGPAEII HG SGFHIDPYH ++AAEL+ +FF +CK  PSHW+ IS GGLKRI E+YTW+IYSERL+TL GVYGFWK+VSKL+R E RRYLEMF  LK+R+L +SVPLA
Sbjct:  675 VIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKYTWQIYSERLLTLGGVYGFWKHVSKLDRIEIRRYLEMFCALKYRNLAESVPLA 799          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.138e-51
Identity = 90/129 (69.77%), Postives = 110/129 (85.27%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            V+EAMTCGLPTFAT +GGPAEII HG SG+HIDPY  D+A+ L+ +FF KC+E+P+HW KIS GGL+RI E+YTWK+YSERLMTL+GVYGFWKYV+ L+RRETRRYLEM Y LK+R +  +VPLA E +
Sbjct:  684 VIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVEFFEKCQEDPNHWIKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVTNLDRRETRRYLEMLYALKYRKMATTVPLAIEGE 812          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.138e-51
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAM+CGLPTFAT  GGPAEII HG SGF IDPYH +QAA+L+ADFF KCK +PSHW+ IS+GGLKRI E+YTW+IYS+RL+TLA VYGFWK+VSKL+R E RRYLEMFY LKFR L + VPLA E
Sbjct:  679 VVEAMSCGLPTFATNQGGPAEIIVHGKSGFQIDPYHGEQAADLLADFFEKCKVDPSHWEAISEGGLKRIQEKYTWQIYSDRLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKFRKLAQLVPLAVE 805          
The following BLAST results are available for this feature:
BLAST of CX294561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUS1_MAIZE3.537e-5372.80Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS2_ORYSJ4.619e-5370.54Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS2_MAIZE6.033e-5372.87Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS1_DAUCA7.879e-5375.59Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_PHAAU1.755e-5274.02Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS2_HORVU1.755e-5271.32Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS1_ORYSJ2.994e-5272.09Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS2_DAUCA8.712e-5274.40Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]
SUS3_ORYSJ1.138e-5169.77Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS2_SOLTU1.138e-5174.80Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054C05SK FlavRip1 Citrus clementina cDNA clone C05054C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294561 ID=CX294561; Name=CX294561; organism=Citrus clementina; type=EST; length=658bp
CTCGTGCCGAATTCGGCACGAGGCAGTTGTGGAAGCTATGACTTGTGGAC
TTCCGACATTCGCCACTTGCCATGGTGGTCCTGCAGAGATTATCGAGCAT
GGTGCGTCAGGGTTCCATATTGATCCATATCACCCTGATCAAGCTGCTGA
ACTCATGGCAGATTTCTTTGGAAAGTGCAAGGAAAATCCAAGCCATTGGA
AAAAAATCTCTGATGGAGGGCTTAAAAGGATTTATGAAAGGTACACCTGG
AAGATTTATTCTGAAAGGCTAATGACATTGGCTGGGGTATATGGTTTCTG
GAAGTATGTTTCAAAACTTGAGAGGCGTGAGACCCGGAGGTACCTTGAGA
TGTTCTACATTCTAAAGTTCCGTGATTTGGTGAAGTCTGTTCCTTTGGCA
AGTGAGAACCAACATTAAGCTGCTGGTACTCAAGGAACTGCTAATAATTA
CCCAGCTACCTCCCGTAACTATAGTGCANAAATAAAGAGTACTTTTTGTA
TGTATATCTAATGCTTTATGTTGTATGGTTAAAAGGATATTCGAGCCTCT
CGACACTTAAATCTTCCTGTGCTATTCTCGACAGTGTTCACAATCGTGGC
TGTCGTGAAAATTTGATTGCTAAGACATTTTAATATTATTATGTTTTCTT
GGTAAAAA
back to top