CX294561

Overview
NameCX294561
Unique NameCX294561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.310e-51
Identity = 93/127 (73.23%), Postives = 108/127 (85.04%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVE+MTCGLPTFATC GGPAEII HG SGFHIDPYH +QAA+L+ DFF K K +PSHW KIS GGL+RI+E+YTWKIYSERL+TL GV  FWK+VS L+R E+RRY+EMFY LK+R L +SVPLA E
Sbjct:  677 VVESMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGEQAAQLLVDFFEKTKADPSHWAKISLGGLQRIHEKYTWKIYSERLLTLTGVTAFWKHVSNLDRLESRRYIEMFYALKYRKLAESVPLAVE 803          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.372e-49
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAM  GLPTFAT +GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS GGL+RI E+YTW IYS+RL+TL GVYGFWK+VS L+R E+RRYLEMFY LK+R L +SVPLA E
Sbjct:  679 VVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISQGGLQRIEEKYTWTIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.047e-49
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAM  GLPTFAT +GGPAEII HG SGFHIDPYH D+AA+L+ +FF K K +PSHW KIS GGL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+R E+RRYLEMFY LK+R L +SVPLA E
Sbjct:  679 VVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_SACOF (Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   80 PAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKF 370
            P EII  G SG HIDPYH D+ A+++ +FF KC  +PS+W +IS GG +RIYE+YTWK+YSERLMTL G YGFW YVSKLER +T RY++MFY L++
Sbjct:  123 PCEIIADGVSGLHIDPYHSDKDADILVNFFDKCNADPSYWDEISQGG-QRIYEKYTWKLYSERLMTLTGAYGFWNYVSKLERGDT-RYIDMFYALEY 217          
The following BLAST results are available for this feature:
BLAST of CX294561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUSY_ALNGL3.310e-5173.23Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUSY_MEDSA2.372e-4971.65Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_VICFA4.047e-4971.65Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_SACOF1.001e-3162.89Sucrose synthase (Fragment) OS=Saccharum officinar... [more]

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Properties
Property NameValue
Genbank descriptionC05054C05SK FlavRip1 Citrus clementina cDNA clone C05054C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294561 ID=CX294561; Name=CX294561; organism=Citrus clementina; type=EST; length=658bp
CTCGTGCCGAATTCGGCACGAGGCAGTTGTGGAAGCTATGACTTGTGGAC
TTCCGACATTCGCCACTTGCCATGGTGGTCCTGCAGAGATTATCGAGCAT
GGTGCGTCAGGGTTCCATATTGATCCATATCACCCTGATCAAGCTGCTGA
ACTCATGGCAGATTTCTTTGGAAAGTGCAAGGAAAATCCAAGCCATTGGA
AAAAAATCTCTGATGGAGGGCTTAAAAGGATTTATGAAAGGTACACCTGG
AAGATTTATTCTGAAAGGCTAATGACATTGGCTGGGGTATATGGTTTCTG
GAAGTATGTTTCAAAACTTGAGAGGCGTGAGACCCGGAGGTACCTTGAGA
TGTTCTACATTCTAAAGTTCCGTGATTTGGTGAAGTCTGTTCCTTTGGCA
AGTGAGAACCAACATTAAGCTGCTGGTACTCAAGGAACTGCTAATAATTA
CCCAGCTACCTCCCGTAACTATAGTGCANAAATAAAGAGTACTTTTTGTA
TGTATATCTAATGCTTTATGTTGTATGGTTAAAAGGATATTCGAGCCTCT
CGACACTTAAATCTTCCTGTGCTATTCTCGACAGTGTTCACAATCGTGGC
TGTCGTGAAAATTTGATTGCTAAGACATTTTAATATTATTATGTTTTCTT
GGTAAAAA
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