CX294578

Overview
NameCX294578
Unique NameCX294578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: SCPL3_CAEEL (CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans GN=scpl-3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.270e-44
Identity = 89/181 (49.17%), Postives = 121/181 (66.85%), Query Frame = 2
Query:   83 LFIKNLPELSSVVPTFRPMLLPKQTRSCPPXXXXXXXXXXXXHSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            + + NLP L+  + +  P L P +TRS P             H +L P D+A   FPV F    + VYVR RP+L+ FL R++  FEIIIFTAS+ +YA +L ++LDP++   RHR+FRE CV V GNY+KDL++LGRD S  +I+DN+ Q+F +Q+DNGIPIESWF DR+D ELL+L  F
Sbjct:   36 VMLANLPPLTEEIMSRCPAL-PVKTRSTPEYTLVLDLDETLVHCSLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGNYVKDLTILGRDPSKTMILDNAVQSFAYQLDNGIPIESWFHDRNDTELLKLCSF 215          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDSL_MOUSE (CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            HS+ +P  +ADF  PV  +   H VYV  RP++ +FL+R+  LFE ++FTAS + YA+ + ++LD +  +FR R+FRESCVF  GNY+KDLS LGR+LS VIIVDNSP ++ F  +N +P++SWFDD +D ELL L+PFF
Sbjct:  119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDSL_HUMAN (CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            HS+ +P  +ADF  PV  +   H VYV  RP++ +FL+R+  LFE ++FTAS + YA+ + ++LD +  +FR R+FRESCVF  GNY+KDLS LGR+LS VIIVDNSP ++ F  +N +P++SWFDD +D ELL L+PFF
Sbjct:  119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDSL_CHICK (CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            HS+ +P  +ADF  PV  +   H VYV  RP++ +FL+R+  LFE ++FTAS + YA+ + ++LD +  +FR R+FRESCVF  GNY+KDLS LGR+LS VIIVDNSP ++ F  +N +P++SWFDD +D ELL L+PFF
Sbjct:  118 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 256          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDS1_MOUSE (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 74/140 (52.86%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            HS+ +P ++ADF  PV  +   H VYV  RP++ +FL+R+  LFE ++FTAS + YA+ + ++LD K   FR R+FRESCVF  GNY+KDLS LGRDL  V+I+DNSP ++ F  DN +P+ SWFD+ SD EL  LLPFF
Sbjct:  103 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF 241          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDS1_HUMAN (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 74/140 (52.86%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            HS+ +P ++ADF  PV  +   H VYV  RP++ +FL+R+  LFE ++FTAS + YA+ + ++LD K   FR R+FRESCVF  GNY+KDLS LGRDL  V+I+DNSP ++ F  DN +P+ SWFD+ SD EL  LLPFF
Sbjct:  103 HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF 241          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDS2_HUMAN (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.185e-34
Identity = 70/142 (49.30%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFFGE 634
            HS+ +P ++ADF  P+      H VYV  RPY+ +FL R+  LFE ++FTAS + YA+ + ++LD +  +FR R+FRESCVF  G Y+KDLS LGRDL   +I+DNSP ++ F  +N +P++SWFDD +D ELL L+P F E
Sbjct:  114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEE 254          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDS2_MOUSE (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 70/142 (49.30%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFFGE 634
            HS+ +P ++ADF  PV      H VYV  RPY+ +FL R+  LFE ++FTAS + YA+ + ++LD +  +FR R+FRE+CVF  G Y+KDLS LGRDL   +I+DNSP ++ F  +N +P++SWFDD +D ELL L+P F E
Sbjct:  113 HSSFKPINNADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFEE 253          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: CTDS_DICDI (Probable C-terminal domain small phosphatase OS=Dictyostelium discoideum GN=fcpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 71/142 (50.00%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFFGE 634
            HS+ +P  + DF  PV      H VYV  RP++ DFL  ++  FEI++FTAS + YA+ +L+ LD  R +  +R+FRESC    GNY+KDLS LGRDL   IIVDNSP ++ F  +N IPI+SWFDD+ D+ELL LLP   +
Sbjct:  149 HSSFKPVHNPDFIVPVEIEGTIHQVYVVKRPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGR-VIHYRLFRESCHNHKGNYVKDLSRLGRDLKSTIIVDNSPSSYLFHPENAIPIDSWFDDKDDRELLDLLPLLDD 289          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: PSR2_YEAST (Probable phosphatase PSR2 OS=Saccharomyces cerevisiae GN=PSR2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            HS+ +    ADF  PV  + Q H VYV  RP + +FL RVS L+E+++FTAS S YA  LL+ LDP   +  HR+FRE+C   +GNY+K+LS +GR LS  II+DNSP ++ F   + +PI SWF D  D ELL ++P
Sbjct:  240 HSSFKYMHSADFVLPVEIDDQVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTI-HHRLFREACYNYEGNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNELLDIIP 376          
The following BLAST results are available for this feature:
BLAST of CX294578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
SCPL3_CAEEL6.270e-4449.17CTD small phosphatase-like protein 3 OS=Caenorhabd... [more]
CTDSL_MOUSE2.821e-3652.86CTD small phosphatase-like protein OS=Mus musculus... [more]
CTDSL_HUMAN2.821e-3652.86CTD small phosphatase-like protein OS=Homo sapiens... [more]
CTDSL_CHICK2.821e-3652.86CTD small phosphatase-like protein OS=Gallus gallu... [more]
CTDS1_MOUSE1.829e-3552.86Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS1_HUMAN1.829e-3552.86Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS2_HUMAN1.185e-3449.30Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS2_MOUSE2.022e-3449.30Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS_DICDI4.980e-3350.00Probable C-terminal domain small phosphatase OS=Di... [more]
PSR2_YEAST1.227e-3148.55Probable phosphatase PSR2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC05054F02SK FlavRip1 Citrus clementina cDNA clone C05054F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294578 ID=CX294578; Name=CX294578; organism=Citrus clementina; type=EST; length=635bp
TGATGAGTATGGTCAAGAGTCTATGACTGATGTTTGCATGGAGGATGATG
ACTATGAGGAATTTGATGACTTTGATCCTTATTTATTTATAAAAAACTTG
CCAGAATTGTCATCAGTGGTCCCCACTTTTCGGCCTATGTTGCTACCTAA
GCAGACACGGAGTTGCCCCCCTACTACTCTTGTTTTGGACTTGGACGAAA
CTCTGGTGCATTCCACTCTAGAGCCCTGTGATGATGCAGACTTCACATTC
CCTGTAAATTTTAACCTCCAAAAGCATACAGTTTATGTTCGATGCCGTCC
TTATCTCAAAGATTTCTTGGAGAGAGTTTCCAGTCTTTTTGAGATAATCA
TATTCACCGCCAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTC
GATCCTAAGAGAAAATTATTTCGGCATCGTGTTTTCCGTGAATCATGTGT
TTTTGTGGATGGCAATTACCTCAAAGATTTGTCAGTTCTTGGCCGTGATT
TGTCACATGTTATCATAGTTGACAACTCCCCACAGGCATTCGGGTTCCAA
GTGGACAATGGAATTCCAATTGAGAGCTGGTTTGATGATCGATCAGATCA
AGAATTGCTTCGATTACTACCATTTTTTGGAGAGC
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