CX294578

Overview
NameCX294578
Unique NameCX294578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_ASPFU (Mitochondrial import inner membrane translocase subunit tim50 OS=Aspergillus fumigatus GN=tim50 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            ++H   +  RP +  FL  ++  +E+++FT+  S+ A+Q+L  LDP R + R  +FRE+  + DG Y+KDLS L RDLS VI++D   +    Q +N I ++ W  D  D+ L+ L+PF
Sbjct:  240 REHGWRIAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWLGDPKDKNLVALIPF 357          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_DEBHA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Debaryomyces hansenii GN=TIM50 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  272 KHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            KH      RP L  FL  +S  +EI+IF ++  +Y+E  +  LDP      + +FRE+C + DG  +KDLS+L RDL   +++D    ++  Q DN IP++ W D   D  L++L+PF
Sbjct:  208 KHGWRTGKRPGLDYFLGYLSQYYEIVIFGSNYQMYSENTVGKLDPFHAYVSYALFREACRYKDGKLVKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKPW-DGSYDDTLVKLIPF 324          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_EMENI (Mitochondrial import inner membrane translocase subunit tim50 OS=Emericella nidulans GN=tim50 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            ++H   V  RP +  FL  ++  +E+++FT+  S+ A+Q+L  LDP R + R  +FRE+  + DG Y+KDLS L RDLS VI++D   +    Q +N I ++ W  +  D+ L+ L+PF
Sbjct:  269 REHGWRVAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWNGNPKDKTLVALIPF 386          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_CANAL (Mitochondrial import inner membrane translocase subunit TIM50 OS=Candida albicans GN=TIM50 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  239 DFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            DF    N++ Q H      RP L  FL  +S  +EI++F+++  IY+++ +N LDP      + +FRE+C + DG  +KDLS+L RDL   +++D    +   Q +N I ++ W + + D+ L+ L+PF
Sbjct:  196 DFLIHSNWDTQ-HGWRTGKRPGLDYFLGYLSQYYEIVVFSSNSQIYSDKTVNKLDPYHAYISYALFREACRYKDGKLIKDLSLLNRDLGKTVMIDVDEDSAALQPENSIIVKKW-EGQPDEYLISLIPF 322          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_ASHGO (Mitochondrial import inner membrane translocase subunit TIM50 OS=Ashbya gossypii GN=TIM50 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 39/110 (35.45%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP     L  +S  +E ++F ++  +Y+++++  LDP R    + +F++ CV+ DG ++KDLS L RDL   +I+D  P +   Q++N I  E W D ++D  LLR +PF
Sbjct:  217 RPGADYLLGYLSDYYENVLFPSNYMVYSKKVVEKLDPIRAFITYNLFKDHCVYKDGIHIKDLSHLNRDLGKTLIIDTDPNSVKLQMENAILAEPW-DGKADDALLRYIPF 325          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_YARLI (Mitochondrial import inner membrane translocase subunit TIM50 OS=Yarrowia lipolytica GN=TIM50 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            ++H   V  RP +  FL  +   +EI++F++      E+L+  LDP    F H + RE   + DG  +KDLS++ RD+  +II+D        Q +N IPIE W     D+EL++L+PF
Sbjct:  210 REHGWRVAKRPGVDYFLGYLGQYYEIVLFSSQYMANCEKLIMKLDPYHAWFSHVLTREHTTYEDGKLVKDLSLMNRDMGKIIIIDPDTGCTMKQPENSIPIEPWKGTPGDKELVKLIPF 328          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_PHYIN (Mitochondrial import inner membrane translocase subunit TIM50 OS=Phytophthora infestans GN=TIM50 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 45/112 (40.18%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFD--DRSDQELLRLLPF 625
            RP + +FLE +   +EI+IF  SQ+  AE+++  LDPK+    H + R++  +++G ++KDLS L RDL  V+I+D+ P A+  Q +N IP+  + +  DR D EL  L+PF
Sbjct:  195 RPGVDEFLETLCQYYEIVIF--SQNYGAEEIVQKLDPKQCAL-HILSRDATRYLNGAHVKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPF 303          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_NEUCR (Mitochondrial import inner membrane translocase subunit tim-50 OS=Neurospora crassa GN=tim-50 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP +  FL  +S  +EI++FT+     AE ++  +DP R +    +FRE+  + DG  +KDLS L RDLS VII+D  P+    Q +N I +  W  D  D EL+ L+PF
Sbjct:  275 RPGVDYFLRYLSQYYEIVLFTSVPFANAEPIVRKMDPYRFIM-WPLFREATKYKDGEIVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAIVLPKWKGDPKDTELVSLVPF 383          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_GIBZE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Gibberella zeae GN=TIM50 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            ++H   +  RP +  F+  +S  +E+++FT +     E ++  LDP R L    ++RE+  F DG  +KDLS L RDLS VII+D   +    Q DN I ++ W  D+ D+ L+ L+PF
Sbjct:  255 REHGWRIAKRPGVDYFIRYLSQYYELVLFTTTPYATGEPVMRKLDPFR-LILWPLYREATKFEDGEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILDPWKGDKDDKNLVNLIPF 372          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_SCHPO (Mitochondrial import inner membrane translocase subunit tim50 OS=Schizosaccharomyces pombe GN=tim50 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            RP L  FL  +S  +E++IFT      A+ +++ +DP        + RES  +  G  +KDLS L RDLS VI++D +P+++  Q DN I +  W  +  D+EL+ L+P
Sbjct:  203 RPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMAPWTGNPKDKELVGLIP 311          
The following BLAST results are available for this feature:
BLAST of CX294578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TIM50_ASPFU1.720e-1737.82Mitochondrial import inner membrane translocase su... [more]
TIM50_DEBHA1.115e-1637.29Mitochondrial import inner membrane translocase su... [more]
TIM50_EMENI1.456e-1637.82Mitochondrial import inner membrane translocase su... [more]
TIM50_CANAL1.901e-1634.11Mitochondrial import inner membrane translocase su... [more]
TIM50_ASHGO1.609e-1535.45Mitochondrial import inner membrane translocase su... [more]
TIM50_YARLI6.116e-1535.29Mitochondrial import inner membrane translocase su... [more]
TIM50_PHYIN1.043e-1440.18Mitochondrial import inner membrane translocase su... [more]
TIM50_NEUCR1.043e-1440.00Mitochondrial import inner membrane translocase su... [more]
TIM50_GIBZE1.362e-1436.13Mitochondrial import inner membrane translocase su... [more]
TIM50_SCHPO1.153e-1336.70Mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054F02SK FlavRip1 Citrus clementina cDNA clone C05054F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294578 ID=CX294578; Name=CX294578; organism=Citrus clementina; type=EST; length=635bp
TGATGAGTATGGTCAAGAGTCTATGACTGATGTTTGCATGGAGGATGATG
ACTATGAGGAATTTGATGACTTTGATCCTTATTTATTTATAAAAAACTTG
CCAGAATTGTCATCAGTGGTCCCCACTTTTCGGCCTATGTTGCTACCTAA
GCAGACACGGAGTTGCCCCCCTACTACTCTTGTTTTGGACTTGGACGAAA
CTCTGGTGCATTCCACTCTAGAGCCCTGTGATGATGCAGACTTCACATTC
CCTGTAAATTTTAACCTCCAAAAGCATACAGTTTATGTTCGATGCCGTCC
TTATCTCAAAGATTTCTTGGAGAGAGTTTCCAGTCTTTTTGAGATAATCA
TATTCACCGCCAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTC
GATCCTAAGAGAAAATTATTTCGGCATCGTGTTTTCCGTGAATCATGTGT
TTTTGTGGATGGCAATTACCTCAAAGATTTGTCAGTTCTTGGCCGTGATT
TGTCACATGTTATCATAGTTGACAACTCCCCACAGGCATTCGGGTTCCAA
GTGGACAATGGAATTCCAATTGAGAGCTGGTTTGATGATCGATCAGATCA
AGAATTGCTTCGATTACTACCATTTTTTGGAGAGC
back to top